Yes, I am calling reduce on a GRanges object. I just hate any warning or error message. That's all.
Yours Sincerely, Jianhong Ou LRB 670A Program in Gene Function and Expression 364 Plantation Street Worcester, MA 01605 On 3/21/14 1:26 PM, "Hervé Pagès" <hpa...@fhcrc.org> wrote: >Hi Jianhong, > >On 03/21/2014 07:01 AM, Ou, Jianhong wrote: >> Hi, >> >> When I run sample code for reduce, I got Warning message: >> The 'with.mapping' argument is deprecated. >> Please use the 'with.revmap' argument instead. > >Not really a bug, just a warning that the 'with.mapping' arg is being >replaced by the 'with.revmap' arg, except that 'with.revmap' is not >available yet when reducing a GRanges object... sorry :-/ Will be in >the next couple of days. > >Note that it's already available when reducing an IRanges object, >but I suspect in your case you're calling reduce() on a GRanges object >right? > >Thanks, >H. > >> >> Yours Sincerely, >> >> Jianhong Ou >> >> LRB 670A >> Program in Gene Function and Expression >> 364 Plantation Street Worcester, >> MA 01605 >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioc-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> > >-- >Hervé Pagès > >Program in Computational Biology >Division of Public Health Sciences >Fred Hutchinson Cancer Research Center >1100 Fairview Ave. N, M1-B514 >P.O. Box 19024 >Seattle, WA 98109-1024 > >E-mail: hpa...@fhcrc.org >Phone: (206) 667-5791 >Fax: (206) 667-1319 _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
