Re: [Bioc-devel] printing GRanges fails

2021-11-21 Thread Oleksii Nikolaienko
Ok, thanks very much Herve. I didn't know about these changes. Best, Oleksii On Sun, 21 Nov 2021 at 20:17, Hervé Pagès wrote: > Hi Oleksii, > > This was caused by the serialized object in ramr/data/ramr.rda being > out-of-sync with the latest changes in S4Vectors (DataFrame became a > virtual c

Re: [Bioc-devel] printing GRanges fails

2021-11-21 Thread Hervé Pagès
Hi Oleksii, This was caused by the serialized object in ramr/data/ramr.rda being out-of-sync with the latest changes in S4Vectors (DataFrame became a virtual class in S4Vectors 0.33.3). See https://bioconductor.org/help/course-materials/2019/BiocDevelForum/02-DataFrame.pdf for the motivatio

[Bioc-devel] printing GRanges fails

2021-11-21 Thread Oleksii Nikolaienko
Hi, devel branch of my package (ramr) cannot be built due to an error which I don't understand. Package has sample data of class GRanges, but when I try to print it I get the following: > library(ramr) > data(ramr) > class(ramr.data) [1] "GRanges" attr(,"package") [1] "GenomicRanges" > ramr.data GR