Ok, thanks very much Herve. I didn't know about these changes. Best, Oleksii
On Sun, 21 Nov 2021 at 20:17, Hervé Pagès <hpages.on.git...@gmail.com> wrote: > Hi Oleksii, > > This was caused by the serialized object in ramr/data/ramr.rda being > out-of-sync with the latest changes in S4Vectors (DataFrame became a > virtual class in S4Vectors 0.33.3). See > > > > https://bioconductor.org/help/course-materials/2019/BiocDevelForum/02-DataFrame.pdf > > for the motivation behind this change. > > Many packages contain serialized S4 objects with this problem. Most of > them got fixed in devel already. Yours was fixed today (ramr 1.3.1, > commit 6f30c30) so the error should clear on tomorrow's build report. > > Make sure to resync your GitHub repo with the ramr repo at > git.bioconductor.org by following the instructions described here: > > https://bioconductor.org/developers/how-to/git/ > > Cheers, > H. > > > On 21/11/2021 07:28, Oleksii Nikolaienko wrote: > > Hi, > > devel branch of my package (ramr) cannot be built due to an error which I > > don't understand. Package has sample data of class GRanges, but when I > try > > to print it I get the following: > >> library(ramr) > >> data(ramr) > >> class(ramr.data) > > [1] "GRanges" > > attr(,"package") > > [1] "GenomicRanges" > >> ramr.data > > GRanges object with 3000 ranges and 100 metadata columns: > > Error: C stack usage 7954616 is too close to the limit > > > > This object seems to be ok in the release branch. Could anyone advise me > on > > further steps, please? > > > > Best regards, > > Oleksii Nikolaienko > > > > [[alternative HTML version deleted]] > > > > _______________________________________________ > > Bioc-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > -- > Hervé Pagès > > Bioconductor Core Team > hpages.on.git...@gmail.com > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
