Re: [Bioc-devel] extracting low-level stuff from Biobase

2014-05-16 Thread Michael Lawrence
That's a cool package; nice that someone addressed that problem systematically. I wasn't suggesting moving stuff into S4Vectors; just closer to that level. But perhaps matrixStats is just the way to go for rowQ. There are similar things in Biobase though; rowQ was just an example. On Fri, May 1

Re: [Bioc-devel] extracting low-level stuff from Biobase

2014-05-16 Thread Kasper Daniel Hansen
I want to remind you of matrixStats by Henrik Bengstson which basically have all of the rowXX colXX for many choices of XX. This unifies a number of utils which are now spread across multiple packages. It would be great to have all of the matrixStats functions (there are not that many) operat

Re: [Bioc-devel] extracting low-level stuff from Biobase

2014-05-16 Thread Vincent Carey
i think they should probably move, but i wonder if S4Vectors is the right destination. is the row concept vector-like? i was looking for rowQ recently and expected it to be in genefilter... On Fri, May 16, 2014 at 11:04 AM, Michael Lawrence < lawrence.mich...@gene.com> wrote: > Would it make s

[Bioc-devel] extracting low-level stuff from Biobase

2014-05-16 Thread Michael Lawrence
Would it make sense to take low-level utilities like rowQ from Biobase and move them closer the S4Vectors level? Michael [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-d