Hello,
My package doesn't ever explicitly call LargeDataObject, so I don't think it
should have to explicitly import it.
I am also confused by the advice that Depends is preferable to Imports. I read
in Writing R Extensions that "Packages whose namespace only is needed to load
the package usin
edgeR knows about LargeDataObject. It's your package that doesn't.
Gordon
On Fri, 27 Jun 2014, Dario Strbenac wrote:
Hello,
I never explicitly use that class in my function. I did debugging and realised
what the problem is. DGEList is part of class hierarchy and it inherits from
the supe
Hello,
I never explicitly use that class in my function. I did debugging and realised
what the problem is. DGEList is part of class hierarchy and it inherits from
the superclass LargeDataObject
> showClass("DGEList")
Class "DGEList" [package "edgeR"]
Slots:
Name: .Data
Class: li
Subject: edgeR estimateGLMRobustDisp Fails when Called From A Package
Date: Thu, 26 Jun 2014 04:00:11 +
From: Dario Strbenac
To: "bioc-devel@r-project.org"
Subject: [Bioc-devel] edgeR estimateGLMRobustDisp Fails when Called
From A Package
Hello,
I am writing a package
From: Gordon K Smyth
Sent: Friday, 27 June 2014 9:32 AM
To: Dario Strbenac
Cc: bioc-devel@r-project.org
Subject: edgeR estimateGLMRobustDisp Fails when Called From A Package
> Date: Thu, 26 Jun 2014 04:00:11 +0000
> From: Dario Strbenac
> To: "bioc-devel@r
Date: Thu, 26 Jun 2014 04:00:11 +
From: Dario Strbenac
To: "bioc-devel@r-project.org"
Subject: [Bioc-devel] edgeR estimateGLMRobustDisp Fails when Called
From A Package
Hello,
I am writing a package that has a function that uses estimateGLMRobustDisp,
leading t
Hi Dario,
Isn't an easier fix to simply add
ImportFrom(limma, loessFit)
in your NAMESPACE file?
Best,
Jim
On 6/26/2014 12:00 AM, Dario Strbenac wrote:
Hello,
I am writing a package that has a function that uses
estimateGLMRobustDisp, leading to an error :
Error in dispBinTrend(y, design,
Hello,
I am writing a package that has a function that uses estimateGLMRobustDisp,
leading to an error :
Error in dispBinTrend(y, design, offset = offset, method.trend = "loess", :
could not find function "loessFit"
Calls: edgeRselection ... estimateGLMTrendedDisp ->
estimateGLMTrendedDisp.
