edgeR knows about LargeDataObject. It's your package that doesn't.
Gordon
On Fri, 27 Jun 2014, Dario Strbenac wrote:
Hello,
I never explicitly use that class in my function. I did debugging and realised
what the problem is. DGEList is part of class hierarchy and it inherits from
the superclass LargeDataObject
showClass("DGEList")
Class "DGEList" [package "edgeR"]
Slots:
Name: .Data
Class: list
Extends:
Class "list", from data part
Class "LargeDataObject", directly
Class "vector", by class "list", distance 2
That's why edgeR needs to know about that class.
--------------------------------------
Dario Strbenac
PhD Student
University of Sydney
Camperdown NSW 2050
Australia
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