Re: [Bioc-devel] cannot reproduce the build error with InTAD package

2020-12-29 Thread Konstantin Okonechnikov
Thanks a lot for the replies! Actually InTAD strongly depends on MultiAssayExperiment. The fail part exactly corresponds to creating the main object with MultiAssayExperiment within. Indeed, I also saw some other recent issues connected to it, will follow them accordingly. >From running command

Re: [Bioc-devel] cannot reproduce the build error with InTAD package

2020-12-28 Thread Dario Strbenac
It looks like you are creating a MultiAssayExperiment in your vignette. Numerous Bioconductor packages relying on MultiAssayExperiment infrastructure started failing a few days ago with the release of version 1.17.3, but I don't see the breaking change explained in the News file. ___

Re: [Bioc-devel] cannot reproduce the build error with InTAD package

2020-12-28 Thread Nitesh Turaga
Hi Konstantin, It seems this is a new issue. Please give the devel build machine one more cycle and we'll see if the issue persists. Did you try to build it using the command in the build machine log (although I doubt it'll change the end result of successfully building on the bioconductor_do

[Bioc-devel] cannot reproduce the build error with InTAD package

2020-12-28 Thread Konstantin Okonechnikov
Hi! I got a note about failing for InTAD package only in Bioc-devel version: http://bioconductor.org/checkResults/devel/bioc-LATEST/InTAD/machv2-buildsrc.html Notably, there were no changes to the package before this error started occurring thus I suppose it might be connected to some updates in