Thanks a lot for the replies!
Actually InTAD strongly depends on MultiAssayExperiment. The fail part
exactly corresponds to creating the main object with
MultiAssayExperiment within. Indeed, I also saw some other recent issues
connected to it, will follow them accordingly.
>From running command suggested by Nitesh I observed fail, but it does not
correspond to the one from report:
*Quitting from lines 82-91 (InTAD.Rmd)Error: processing vignette
'InTAD.Rmd' failed with diagnostics:could not find function "Biocpkg"*
Not sure if it's connected to the current issue or some lack of
environment adjustment since I had my system build of R-devel, but Biocpkg
call in these lines exactly refers to citation of MultiAssayExperiment.
Best regards,
Konstantin
On Mon, Dec 28, 2020 at 11:00 PM Dario Strbenac <dstr7...@uni.sydney.edu.au>
wrote:
> It looks like you are creating a MultiAssayExperiment in your vignette.
> Numerous Bioconductor packages relying on MultiAssayExperiment
> infrastructure started failing a few days ago with the release of version
> 1.17.3, but I don't see the breaking change explained in the News file.
> _______________________________________________
> Bioc-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>
[[alternative HTML version deleted]]
_______________________________________________
Bioc-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel
