Great!
Both problem are solved.
Thanks a lot.
On Mon, 2012-11-19 at 07:08 -0800, Martin Morgan wrote:
> On 11/19/2012 02:15 AM, Anita Lerch wrote:
> > Hi,
> > even if I import IRanges, the error persist.
>
> I've updated ShortRead (in devel, which requires using R-devel) to 1.17.5,
> addressing
On 11/19/2012 02:15 AM, Anita Lerch wrote:
Hi,
even if I import IRanges, the error persist.
I've updated ShortRead (in devel, which requires using R-devel) to 1.17.5,
addressing the import problem. This is available via svn now or biocLite
tomorrow (Tuesday) after 10am Seattle time.
I think
Hi,
even if I import IRanges, the error persist.
Anita
On Fri, 2012-11-16 at 13:42 +, Hahne, Florian wrote:
> Hi Anita,
> it seems that FilterRules is defined in the IRanges package. If you want
> to use it you will have to explicitly import it. Can't quite see how this
> is related to import
Oh wait, correction. Not your fault. I thought you call FilterRules
directly. So ShortRead is using it internally in methods-SRFilter.R and
never imports it from IRanges. Looks like a simple fix in there.
Florian
--
On 11/16/12 12:40 PM, "Anita Lerch" wrote:
>Hi,
>
>I have two problems whe
Hi Anita,
it seems that FilterRules is defined in the IRanges package. If you want
to use it you will have to explicitly import it. Can't quite see how this
is related to importing or not importing ShortRead. The only reason why
this works when you require ShortRead is because it depends on IRanges
Hi,
I have two problems when I import ShortRead into my packages.
1. I get the following warning, when I load my package
Warning message:
"replacing previous import ‘show’ when loading ‘ShortRead’"
--> It looks to me like a conflict between BiocGenerics and
ShortRead. How can I get
