till on error. Thanks!
>>>> >> >>
>>>> >> >> Cheers,
>>>> >> >> Sokratis
>>>> >> >>
>>>> >> >> On Tue, Aug 1, 2023 at 4:25 PM Sokratis Kariotis <
>>&g
;>> >> >>
>>> >> >>> Hey,
>>> >> >>>
>>> >> >>> I believe I have resolved the conflicts and now can run: *git push
>>> >> >>> upstream main:devel*
>>> >> >>> with Everything u
On Tue, Aug 1, 2023 at 4:25 PM Sokratis Kariotis <
>>> >> >> sokratiskario...@gmail.com> wrote:
>>> >> >>
>>> >> >>> Hey,
>>> >> >>>
>>> >> >>> I believe I have resolved the conflic
t push origin
>> >> main*
>> >> >>> does not yield
>> >> >>> anything and it keeps hanging without a message. I checked
>> >> https://bioconductor.org/checkResults/3.18/bioc-LATEST/omada/
>> >> >>> and the
ps://bioconductor.org/checkResults/3.18/bioc-LATEST/omada/
> >> >>> and the last commit is April.
> >> >>>
> >> >>>
> >> >>> On Mon, Jul 31, 2023 at 10:01 PM Kern, Lori <
> >> >>> lori.sheph...@roswellpar
gt; (pre-receive hook declined)error: failed to push some refs to
>> >>>> >> 'git.bioconductor.org:packages/omada'*
>> >>>> >>
>> >>>> >>
>> >>>> >>
>> >>>> >> On Mon, Jul 31, 2023
wrote:
> >>>
> >>>> You'll need to find the merge conflicts and resolve them. Recommit
> >>>> those files and then it should go.
> >>>>
> >>>> Lori Shepherd - Kern
> >>>>
> >>>> Bioconductor Core Team
gt;> >> >> > *Cc:* Oleksii Nikolaienko ;
>>>> >> >> > bioc-devel@r-project.org
>>>> >> >> > *Subject:* Re: [Bioc-devel] Omada package failing due to removed
>>>> >> >> > dependency
>>>&g
; > Perhaps you can include the git command you're running to submit the
>>> >> > changes and a copy of the exact error you're receiving. That might
>>> help
>>> >> > the team suggest a solution.
>>> >> >
>>> >>
ve Cancer Center
>>
>> Department of Biostatistics & Bioinformatics
>>
>> Elm & Carlton Streets
>>
>> Buffalo, New York 14263
>> --
>> *From:* Bioc-devel on behalf of
>> Sokratis Kariotis
>> *Sent:* Monday, J
; >
> > Buffalo, New York 14263
> > --------------
> > *From:* Bioc-devel on behalf of
> > Sokratis Kariotis
> > *Sent:* Monday, July 31, 2023 7:27 AM
> > *To:* Martin Grigorov
> > *Cc:* bioc-devel@r-project.org
> > *Subject:* R
o:* Martin Grigorov
> *Cc:* bioc-devel@r-project.org
> *Subject:* Re: [Bioc-devel] Omada package failing due to removed
> dependency
>
> Tried but its Already up to date.
>
> On Mon, 31 Jul 2023, 7:22 pm Martin Grigorov,
> wrote:
>
> > Hi Sokratis,
> >
> &g
ew York 14263
From: Bioc-devel on behalf of Sokratis
Kariotis
Sent: Monday, July 31, 2023 7:27 AM
To: Martin Grigorov
Cc: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] Omada package failing due to removed dependency
Tried but its Already up to date.
On Mon, 31 Jul
rs,
>> >> Sokratis
>> >>
>> >> On Wed, Jul 12, 2023 at 1:43 AM Kern, Lori <
>> lori.sheph...@roswellpark.org
>> >> >
>> >> wrote:
>> >>
>> >> > We can give you a little more time (a few weeks) to fix
to CRAN
> >> > It's a little tricky cause this is a CRAN package so I'm not sure on
> >> their
> >> > exact policy of taking over an abandoned package. If this is
> desired, I
> >> > would reach out to CRAN to find out their exact policy
> >> > 2. Move n
>> > Bioconductor Core Team
>> >
>> > Roswell Park Comprehensive Cancer Center
>> >
>> > Department of Biostatistics & Bioinformatics
>> >
>> > Elm & Carlton Streets
>> >
>> > Buffalo, New York 14263
>> &
R code I would add a comment above the code to reference original
> > package citation and stating it was copied from there. I'm not a lawyer
> or
> > license/copy right expert so not sure if that would be good enough but
> that
> > would be my take on it.
> >
> > Lor
ariotis
Sent: Friday, July 28, 2023 2:31 AM
To: Kern, Lori
Cc: Oleksii Nikolaienko ;
bioc-devel@r-project.org
Subject: Re: [Bioc-devel] Omada package failing due to removed dependency
Hey both,
I have edited the package code but I'm having some difficulties pushing it to
trigger another build
.com>>;
bioc-devel@r-project.org<mailto:bioc-devel@r-project.org>
mailto:bioc-devel@r-project.org>>
Subject: Re: [Bioc-devel] Omada package failing due to removed dependency
Hey both,
I have checked the package license (GPL) and it should be fine to use the code.
However
; Elm & Carlton Streets
>
> Buffalo, New York 14263
> --
> *From:* Sokratis Kariotis
> *Sent:* Monday, July 10, 2023 10:27 AM
> *To:* Kern, Lori
> *Cc:* Oleksii Nikolaienko ;
> bioc-devel@r-project.org
> *Subject:* Re: [Bioc-devel] Omad
Streets
Buffalo, New York 14263
From: Sokratis Kariotis
Sent: Monday, July 10, 2023 10:27 AM
To: Kern, Lori
Cc: Oleksii Nikolaienko ;
bioc-devel@r-project.org
Subject: Re: [Bioc-devel] Omada package failing due to removed dependency
Hey both,
I have checked the
New York 14263
> --
> *From:* Oleksii Nikolaienko
> *Sent:* Thursday, July 6, 2023 1:58 AM
> *To:* Sokratis Kariotis
> *Cc:* Kern, Lori ; bioc-devel@r-project.org
>
> *Subject:* Re: [Bioc-devel] Omada package failing due to removed
&
__
From: Oleksii Nikolaienko
Sent: Thursday, July 6, 2023 1:58 AM
To: Sokratis Kariotis
Cc: Kern, Lori ; bioc-devel@r-project.org
Subject: Re: [Bioc-devel] Omada package failing due to removed dependency
https://nonstationarity.sciencesconf.org/resource/page/id/7&
>>
>> Roswell Park Comprehensive Cancer Center
>>
>> Department of Biostatistics & Bioinformatics
>>
>> Elm & Carlton Streets
>>
>> Buffalo, New York 14263
>> --
>> *From:* Bioc-devel on behalf of
>>
t; Buffalo, New York 14263
> --
> *From:* Bioc-devel on behalf of
> Oleksii Nikolaienko
> *Sent:* Thursday, June 29, 2023 5:36 AM
> *To:* Sokratis Kariotis
> *Cc:* bioc-devel@r-project.org
> *Subject:* Re: [Bioc-devel] Omada package failing
rk 14263
From: Bioc-devel on behalf of Oleksii
Nikolaienko
Sent: Thursday, June 29, 2023 5:36 AM
To: Sokratis Kariotis
Cc: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] Omada package failing due to removed dependency
Hi,
in this case maybe it's worth reaching out to the maintainer o
Hi,
in this case maybe it's worth reaching out to the maintainer of
clusterCrit. It was removed from CRAN because of (seems-to-be) minor
warnings, which can be addressed by the clusterCrit developer in no time...
Best,
Oleksii
On Thu, 29 Jun 2023 at 08:44, Sokratis Kariotis
wrote:
> Dear Biocon
Dear Bioconductor team,
I received an email that my package "Omada" is failing in release and
devel. I had a look and the problem seems to be: *ERROR: dependency
‘clusterCrit’ is not available for package ‘omada’*. So the package
clusterCrit was removed. Is there a way I can use a archived version
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