Hey, I haven't received any responses from the maintainer of ClusterCrit so I guess I will have to re-write the code used. How can I properly go about this and credit the authors as well? Thanks!
Cheers, Sokratis On Thu, Jun 29, 2023 at 7:38 PM Kern, Lori <lori.sheph...@roswellpark.org> wrote: > We do not allow archived packages to be used. All dependencies must be on > CRAN or Bioconductor. So yes if you can get them to reinstate the package > on CRAN that would be ideal. If not you will have to remove the package > from the dependency list and either re-write the code used (giving original > clusterCrit authors credit) or remove the functionality used from that > package. > > Lori Shepherd - Kern > > Bioconductor Core Team > > Roswell Park Comprehensive Cancer Center > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > ------------------------------ > *From:* Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of > Oleksii Nikolaienko <oleksii.nikolaie...@gmail.com> > *Sent:* Thursday, June 29, 2023 5:36 AM > *To:* Sokratis Kariotis <sokratiskario...@gmail.com> > *Cc:* bioc-devel@r-project.org <bioc-devel@r-project.org> > *Subject:* Re: [Bioc-devel] Omada package failing due to removed > dependency > > Hi, > in this case maybe it's worth reaching out to the maintainer of > clusterCrit. It was removed from CRAN because of (seems-to-be) minor > warnings, which can be addressed by the clusterCrit developer in no time... > > Best, > Oleksii > > On Thu, 29 Jun 2023 at 08:44, Sokratis Kariotis < > sokratiskario...@gmail.com> > wrote: > > > Dear Bioconductor team, > > > > I received an email that my package "Omada" is failing in release and > > devel. I had a look and the problem seems to be: *ERROR: dependency > > ‘clusterCrit’ is not available for package ‘omada’*. So the package > > clusterCrit was removed. Is there a way I can use a archived version of > it > > (or something similar) so I don't have to rewrite code based on new > > packages to avoid potentially inconsistencies? Please advise, thank you! > > > > Cheers, > > Dr. Sokratis Kariotis (PhD) > > Agency for Science, Technology and Research (A*STAR) > > Singapore Immunology Network (SIgN) > > Twitter: @s_kariotis < > https://secure-web.cisco.com/1EqWv8V2N5hRbw3HmoPEY8RdpEeWxqDoUa71DV8jQUiygXZiRjRxTOSFFWWDUSN7nw3Aviue7E_1xQuvbY4J8O3un4nvR0wtrlQUjMbs1vFGt5o9bI_InwlMvRWb2dhIe9ic0_2ugbdCwXwW_RGN1G4LJxUxm_yO9EkGSnc10bfG2fjit4oALm7Y8gMqnFusMJfqR3j-IKbu0Hem-jPRYXIeAurGmn1l7FvPYk9Pi6MHnOl1RN-5x19R655qOhP8vtsh9q-qwvckAbwuklQvq6lo0zKstGTdB6JkFCIIHswJrur4WrdjGMtwrYkWwOAQs/https%3A%2F%2Ftwitter.com%2Fs_kariotis > > > > LinkedIn: > http://secure-web.cisco.com/1hrH0VDgCpCKm6BWl_eP9v57iZE2j6Y9RUetJ4RMrKylsFeYV7AWyeBfOewj6SpLxhrD-_JnI4sPdaUJB9Mwxuj-B5ot2FZIu4AU87ty04CdxW8zw9DShqtsaZPm68os9ySeI12kEcN_iujEcY11StQo1_qKeBsQchHO3Vc_qvfAbA2T29jSt4KX0OnG4UZENEfns3cigBqNgiYMOOiCGmz01_nIY5M3cgVbsTmSNA-pov7ZD6si4bOXF6pt-manBCeK0NB13icO5MMlpc8HNxSqkARD7n-R71Sa3ZsGQOIYPgA0uuuIRAR9DbV_F5kSj/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis > > > > [[alternative HTML version deleted]] > > > > _______________________________________________ > > Bioc-devel@r-project.org mailing list > > > https://secure-web.cisco.com/1CoMZlPPSNe-MfqZkOpNFvpMkwbnIVkEbPIxbET9FKoHMGCVzTeeTdPJGpD4PHivCSzZwalSMt8BeA1_Ab8Pa5gS2jCkg9_onfbYE3UAgbywg5GD1CrAN86qgN8FH4tjTwPBq95yDFIvYCamr14TUrSDkZKUvFhtAw7FR6bpJ_Ub9z2fU6f-G3Xw_FHRqcg6aM9xrpq4GmnfMOKO_Jlf10TJsdvhdReM9Phw2lV_EMy55ZjFYD5bteCpN4_qqRQb4_J6IbFYjlRQEi1A0DiwxC67Gzaf0QPTRszxXRxqPy4oancisQKzNmQJod-2cz9Oa/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel > > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > > https://secure-web.cisco.com/1CoMZlPPSNe-MfqZkOpNFvpMkwbnIVkEbPIxbET9FKoHMGCVzTeeTdPJGpD4PHivCSzZwalSMt8BeA1_Ab8Pa5gS2jCkg9_onfbYE3UAgbywg5GD1CrAN86qgN8FH4tjTwPBq95yDFIvYCamr14TUrSDkZKUvFhtAw7FR6bpJ_Ub9z2fU6f-G3Xw_FHRqcg6aM9xrpq4GmnfMOKO_Jlf10TJsdvhdReM9Phw2lV_EMy55ZjFYD5bteCpN4_qqRQb4_J6IbFYjlRQEi1A0DiwxC67Gzaf0QPTRszxXRxqPy4oancisQKzNmQJod-2cz9Oa/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. > -- Cheers, Sokratis Kariotis PhD Student University of Sheffield, Medical School MedTech <https://www.facebook.com/medtechsheffield/>President Twitter: @s_kariotis <https://twitter.com/s_kariotis> LinkedIn: http://www.linkedin.com/in/sokratiskariotis [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
