Re: [Bioc-devel] New Mac builder and availability of Mac binary packages

2020-04-10 Thread Hervé Pagès
On 4/10/20 17:22, Yang,Peng wrote: Hi Herve, Ok, I will use the condition to disable OpenMP for Mac OS. And I need to push it into the devel branch before Apr 24th? Just make sure that I understand it right. Yes, before Apr 24th. See our release schedule here: https://bioconductor.org/deve

Re: [Bioc-devel] New Mac builder and availability of Mac binary packages

2020-04-10 Thread Hervé Pagès
On 4/10/20 16:54, Yang,Peng wrote: Hi Herve, Thank you so much for hearing back from you. Actually we are thinking to switch OpenMP into MPI or other API, which is supported by R 4.0.0; however, it may take us for a while. In the meantime, I have noticed that the scheduled time to release R 4.

Re: [Bioc-devel] New Mac builder and availability of Mac binary packages

2020-04-10 Thread Hervé Pagès
Hi Peng, You cannot "push" binaries. DeMixT has a compilation error (+ some imporant warnings) that seem to be caused by the use of OpenMP in its C code. Unfortunately, starting with R 4.0.0, R no longer supports OpenMP on macOS. You basically have 3 options, from best to worst: 1. use con

Re: [Bioc-devel] New Mac builder and availability of Mac binary packages

2020-04-09 Thread Yang,Peng
Dear Bioconductor team, I just found out that our package DeMixT 1.3.5 is failed to install for Mac under the developed version. Does that mean I need to rebuild the package under the official Mac build of R 4.0.0 alpha and push it again? Thanks, Peng On 4/9/20, 4:13 PM, "Bioc-devel on behal

[Bioc-devel] New Mac builder and availability of Mac binary packages

2020-04-09 Thread Hervé Pagès
Hello Bioconductor developers, As you've probably noticed already, we're building BioC 3.11 on Mac again: https://bioconductor.org/checkResults/3.11/bioc-LATEST/ The build target now is High Sierra (used to be El Capitan), like for the official Mac built of R 4.0.0 alpha (available here htt