ub.io
De: Spencer Nystrom
Enviado: terça-feira, 24 de agosto de 2021 09:19
Para: Fabricio de Almeida
Cc: Hervé Pagès ; bioc-devel@r-project.org
Assunto: Re: [Bioc-devel] External dependencies and reproducibility in all
platforms
Hi Fabricio,
For another bit of practical advic
nda-feira, 23 de agosto de 2021 19:49
> Para: Fabricio de Almeida ;
> bioc-devel@r-project.org
> Assunto: Re: [Bioc-devel] External dependencies and reproducibility in all
> platforms
>
> On 23/08/2021 17:05, Fabricio de Almeida wrote:
> > Thank you for the suggestions, He
---
> *De:* Hervé Pagès
> *Enviado:* segunda-feira, 23 de agosto de 2021 18:53
> *Para:* Fabricio de Almeida ;
> bioc-devel@r-project.org
> *Assunto:* Re: [Bioc-devel] External dependencies and reproducibility in
> all platforms
> On 23/08/2021 16:35, Fa
e Almeida ;
bioc-devel@r-project.org
*Assunto:* Re: [Bioc-devel] External dependencies and reproducibility in
all platforms
On 23/08/2021 16:35, Fabricio de Almeida wrote:
Hi, Hervé.
Thank you for making this clear to me. I will try to think of an optimal
solution for this. The issue here is tha
ps://almeidasilvaf.github.io
>
>
> ----
> *De:* Hervé Pagès
> *Enviado:* segunda-feira, 23 de agosto de 2021 16:57
> *Para:* Fabricio de Almeida ;
> bioc-devel@r-project.org
> *Assunto:* Re: [Bioc-devel] Ex
;
bioc-devel@r-project.org
*Assunto:* Re: [Bioc-devel] External dependencies and reproducibility in
all platforms
Hi Fabricio,
If your package requires external software/libraries/tools in order to
pass 'R CMD build' and 'R CMD check', then please list them in the
SystemRequireme
: https://almeidasilvaf.github.io
De: Hervé Pagès
Enviado: segunda-feira, 23 de agosto de 2021 16:57
Para: Fabricio de Almeida ;
bioc-devel@r-project.org
Assunto: Re: [Bioc-devel] External dependencies and reproducibility in all
platforms
Hi Fabricio,
If your
Hi Fabricio,
If your package requires external software/libraries/tools in order to
pass 'R CMD build' and 'R CMD check', then please list them in the
SystemRequirements field of your DESCRIPTION file. In addition, we
kindly ask you to provide an INSTALL file in the top-level folder of
your p
Dear Bioc developers,
I am writing a package that contains external dependencies, and I'd like to
know what are the best practices to submit this kind of package to Bioconductor.
The external dependencies are standard RNA-seq analysis algorithms, such as
SRAtoolkit, STAR and salmon. I have seen
