Re: [Bioc-devel] COHCAP GitHub Update

2017-09-09 Thread Charles Warden
gt;>> Auto-merging CHANGES >>>>>>> >>>>>>> CONFLICT (add/add): Merge conflict in CHANGES >>>>>>> >>>>>>> [modified files to keep changes intended for SVN Bioconductor >>>>>>> repository] >>>>>>> >>>&g

Re: [Bioc-devel] COHCAP GitHub Update

2017-09-09 Thread Martin Morgan
and I provided that key in the git/svn transition Google Doc file. I was trying to provide a key what would only affect the COHCAP package, and not the other projects that are not Bioconductor projects. Please let me know if this still works. Thanks, Charles On Thu, Aug 24, 2017 at 5:59 AM,

Re: [Bioc-devel] COHCAP GitHub Update

2017-09-09 Thread Sean Davis
the remote changes (e.g. >>>>> >>>>> hint: 'git pull ...') before pushing again. >>>>> >>>>> hint: See the 'Note about fast-forwards' in 'git push --help' for >>>>> details. >>>>> >>>>

Re: [Bioc-devel] COHCAP GitHub Update

2017-09-09 Thread Charles Warden
kflow/ >>>> > >>>> > • SSH (developer) read / write access: >>>> g...@git.bioconductor.org >>>> > • HTTPS (public) read only access: >>>> https://git.bioconductor.org >>>> > >>>> > >&

Re: [Bioc-devel] COHCAP GitHub Update

2017-09-04 Thread Sean Davis
I'm testing making a minor change (not affecting functionality, in >>> the >>> > "CHANGES" text file) to one of the files from the Bioconductor >>> repository >>> > (without trying to sync the repositories), and I get the following >>> error >>> &

Re: [Bioc-devel] COHCAP GitHub Update

2017-09-04 Thread Charles Warden
t; > >> > > Checking connectivity... done. >> > > >> > > cwarden$ cd COHCAP >> > > >> > > COHCAP cwarden$ git checkout master >> > > >> > > Already on 'master' >> > > >> > > Your branch

Re: [Bioc-devel] COHCAP GitHub Update

2017-09-04 Thread Sean Davis
commit -a -m "fake commit" > > > > > > [master 225f7ac] fake commit > > > > > > 1 file changed, 1 insertion(+) > > > > > > COHCAP cwarden$ git status > > > > > > On branch master > > > > > >

Re: [Bioc-devel] COHCAP GitHub Update

2017-09-04 Thread Charles Warden
onductor repository? > > > > Thanks, > > Charles > > > > On Thu, Aug 24, 2017 at 11:07 AM, Charles Warden > wrote: > > Hi Martin and Nitesh, > > > > Thanks for your help. > > > > I created a public ssh-key, I added it as a deploy key

Re: [Bioc-devel] COHCAP GitHub Update

2017-09-03 Thread Turaga, Nitesh
les > > On Thu, Aug 24, 2017 at 5:59 AM, Martin Morgan > wrote: > On 08/24/2017 07:27 AM, Turaga, Nitesh wrote: > http://bioconductor.org/developers/how-to/git/<http://bioconductor.org/developers/how-to/git/faq/>faq<http://bioconductor.org/developers/how-to/git/faq/>/&

Re: [Bioc-devel] COHCAP GitHub Update

2017-09-03 Thread Charles Warden
rs/how-to/git/<http://biocon >>> ductor.org/developers/how-to/git/faq/>faq<http://bioconducto >>> r.org/developers/how-to/git/faq/>/<http://bioconductor.org/ >>> developers/how-to/git/faq/> >>> >>> Get Outlook for Android<https://aka.ms/

Re: [Bioc-devel] COHCAP GitHub Update

2017-08-24 Thread Charles Warden
>> From: Charles Warden >> Sent: Wednesday, August 23, 2017 11:32:42 PM >> To: Turaga, Nitesh >> Subject: Re: [Bioc-devel] COHCAP GitHub Update >> >> Hi Nitesh, >> >> I am getting a slightly different error message,

Re: [Bioc-devel] COHCAP GitHub Update

2017-08-24 Thread Martin Morgan
oid<https://aka.ms/ghei36> From: Charles Warden Sent: Wednesday, August 23, 2017 11:32:42 PM To: Turaga, Nitesh Subject: Re: [Bioc-devel] COHCAP GitHub Update Hi Nitesh, I am getting a slightly different error message, now that I am changing to be wit

Re: [Bioc-devel] COHCAP GitHub Update

2017-08-24 Thread Turaga, Nitesh
017 11:32:42 PM > To: Turaga, Nitesh > Subject: Re: [Bioc-devel] COHCAP GitHub Update > > Hi Nitesh, > > I am getting a slightly different error message, now that I am changing to be > within the COHCAP directory: > > ## Start Code > > COHCAP c

Re: [Bioc-devel] COHCAP GitHub Update

2017-08-24 Thread Turaga, Nitesh
___ From: Charles Warden Sent: Wednesday, August 23, 2017 11:32:42 PM To: Turaga, Nitesh Subject: Re: [Bioc-devel] COHCAP GitHub Update Hi Nitesh, I am getting a slightly different error message, now that I am changing to be within the COHCAP directory: ## Start Code C

Re: [Bioc-devel] COHCAP GitHub Update

2017-08-23 Thread Turaga, Nitesh
Hi Maybe what you want to follow is this http://bioconductor.org/developers/how-to/git/maintain-github-bioc/, Best, Nitesh > On Aug 23, 2017, at 5:13 PM, Charles Warden wrote: > > Hi, > > I downloaded code for the COHCAP Bioconductor SVN repository ( > https://hedgehog.fhcrc.org/bioconduct

Re: [Bioc-devel] COHCAP GitHub Update

2017-08-23 Thread Turaga, Nitesh
Hi > On Aug 23, 2017, at 5:13 PM, Charles Warden wrote: > > Hi, > > I downloaded code for the COHCAP Bioconductor SVN repository ( > https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/COHCAP/), made > some changes, and then tried to commit those changes. However, I got an > error mess

[Bioc-devel] COHCAP GitHub Update

2017-08-23 Thread Charles Warden
Hi, I downloaded code for the COHCAP Bioconductor SVN repository ( https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/COHCAP/), made some changes, and then tried to commit those changes. However, I got an error message that the SVN repository is locked, so the changes could not be upload