Hi, I'm sorry, but I am having an issue setting up my ssh key. In particular, it is not recognizing the passcode (and I've tried copying over a new id_rsa.pub file as well as double-checking the passcode):
:~/.ssh$ ssh-add id_rsa.pub Enter passphrase for id_rsa.pub: Bad passphrase, try again for id_rsa.pub: I also tried following these github instructions ( https://help.github.com/articles/error-permission-denied-publickey/): I didn't see a solution, but I can confirm the problem: ~/.ssh$ ssh -T g...@github.com Permission denied (publickey) Since Sean was able to run "git clone g...@git.bioconductor.org:packa ges/COHCAP.git", is there some other modification I should make to ssh key? If it matters, the original computer was a Mac OSX and the computer I am trying to manage COHCAP from is an Ubuntu VM (running within Windows). Also, the error message is the same if using the bioconductor git instead of the github: ~/.ssh$ ssh -T g...@git.bioconductor.org Permission denied (publickey). Thanks, Charles On Mon, Sep 4, 2017 at 5:28 PM, Sean Davis <seand...@gmail.com> wrote: > Hi, Charles. See replies inline. > > On Mon, Sep 4, 2017 at 3:30 PM, Charles Warden <cwarde...@gmail.com> > wrote: > >> Hi Sean, >> >> I'm admittedly on a different computer now, but I still get an error >> message (although it is different than the last one): >> >> git clone g...@git.bioconductor.org:packages/COHCAP.git >> Cloning into 'COHCAP'... >> Permission denied (publickey). >> fatal: Could not read from remote repository. >> >> Please make sure you have the correct access rights >> and the repository exists. >> > > This error means that there is a problem with your git ssh key. It could > be that your private key is not present on the new computer or that the ssh > key on Bioconductor has not been registered. Given the error below, it > appears that at least one ssh key is working. > > >> >> Also, there was a lot of text in the previous message, but I tried >> following the commands to merge and update the Bioconductor and GitHub >> COHCAP repositories. On that computer (the computer where I defined the >> ssh key), I could run "git remote add upstream g...@git.bioconductor.org: >> packages/COHCAP.git", but I ran into a problem at the push step: >> >> COHCAP cwarden$ git push upstream master >> >> To g...@git.bioconductor.org:packages/COHCAP.git >> >> ! [rejected] master -> master (non-fast-forward) >> >> error: failed to push some refs to 'g...@git.bioconductor.org: >> packages/COHCAP.git' >> >> hint: Updates were rejected because the tip of your current branch is >> behind >> >> hint: its remote counterpart. Integrate the remote changes (e.g. >> >> hint: 'git pull ...') before pushing again. >> > > You can often follow the instructions suggested by "hints" given by git. > In this case, it appears that there are some commits present at > Bioconductor that are not present in your local clone. Doing a `git pull` > will fetch and merge those changes. Assuming there are no merge conflicts, > you should then be able to push. > > >> >> >> hint: See the 'Note about fast-forwards' in 'git push --help' for details. >> >> Is there a way that I should modify the ssh "git clone >> g...@git.bioconductor.org:packages/COHCAP.git" command? >> > > You have had a few separate issues on this thread. My last comment about > `git pull` means that your first two problems (typo in the URL, missing or > mismatched ssh key) were overcome already. I'd proceed from there. > > Hope that helps, > Sean > > > >> >> Thanks, >> Charles >> >> On Mon, Sep 4, 2017 at 11:41 AM, Sean Davis <seand...@gmail.com> wrote: >> >>> Hi, Charles. >>> >>> The command is slightly off. Note the first '/' is a ':'. This worked >>> for me: >>> >>> git clone g...@git.bioconductor.org:packages/COHCAP.git >>> Cloning into 'COHCAP'... >>> remote: Counting objects: 485, done. >>> remote: Compressing objects: 100% (479/479), done. >>> remote: Total 485 (delta 329), reused 0 (delta 0) >>> Receiving objects: 100% (485/485), 104.78 KiB | 0 bytes/s, done. >>> Resolving deltas: 100% (329/329), done. >>> >>> Sean >>> >>> >>> On Mon, Sep 4, 2017 at 2:15 PM, Charles Warden <cwarde...@gmail.com> >>> wrote: >>> >>>> Hi Nitesh, >>>> >>>> Thanks. Unfortunately, I can't connect to the Bioconductor repository >>>> that >>>> way: >>>> >>>> >>>> *cwarden$ git clone g...@git.bioconductor.org/packages/COHCAP.git >>>> <http://g...@git.bioconductor.org/packages/COHCAP.git>* >>>> >>>> *fatal: repository 'g...@git.bioconductor.org/packages/COHCAP.git >>>> <http://g...@git.bioconductor.org/packages/COHCAP.git>' does not exist* >>>> >>>> >>>> However, I can connect and update the GitHub repository with the SSH >>>> commands: >>>> >>>> cwarden$ git clone g...@github.com:cwarden45/COHCAP.git >>>> >>>> Cloning into 'COHCAP'... >>>> >>>> Saving password to keychain failed >>>> >>>> Identity added: /Users/cwarden/.ssh/id_rsa ((null)) >>>> >>>> remote: Counting objects: 59, done. >>>> >>>> remote: Compressing objects: 100% (53/53), done. >>>> >>>> remote: Total 59 (delta 9), reused 3 (delta 2), pack-reused 0 >>>> >>>> Receiving objects: 100% (59/59), 56.83 KiB | 0 bytes/s, done. >>>> >>>> Resolving deltas: 100% (9/9), done. >>>> >>>> Checking connectivity... done. >>>> >>>> BR11252:COHCAP cwarden$ git status >>>> >>>> On branch master >>>> >>>> Your branch is up-to-date with 'origin/master'. >>>> >>>> Changes not staged for commit: >>>> >>>> (use "git add <file>..." to update what will be committed) >>>> >>>> (use "git checkout -- <file>..." to discard changes in working >>>> directory) >>>> >>>> >>>> modified: CHANGES >>>> >>>> >>>> no changes added to commit (use "git add" and/or "git commit -a") >>>> >>>> BR11252:COHCAP cwarden$ git commit -a -m "test commit" >>>> >>>> [master f2aded7] test commit >>>> >>>> 1 file changed, 1 insertion(+) >>>> >>>> BR11252:COHCAP cwarden$ git push >>>> >>>> Warning: Permanently added the RSA host key for IP address >>>> '192.30.255.112' >>>> to the list of known hosts. >>>> >>>> Counting objects: 3, done. >>>> >>>> Delta compression using up to 8 threads. >>>> >>>> Compressing objects: 100% (3/3), done. >>>> >>>> Writing objects: 100% (3/3), 302 bytes | 0 bytes/s, done. >>>> >>>> Total 3 (delta 2), reused 0 (delta 0) >>>> >>>> remote: Resolving deltas: 100% (2/2), completed with 2 local objects. >>>> >>>> To g...@github.com:cwarden45/COHCAP.git >>>> >>>> 5285d59..f2aded7 master -> master >>>> >>>> *If it helps with troubleshooting, I can also try to update the >>>> Bioconductor repository as an upstream link to the GitHub repository, >>>> but >>>> that also does not work (at the push step, see below):* >>>> >>>> >>>> cwarden$ git clone g...@github.com:cwarden45/COHCAP.git >>>> >>>> Cloning into 'COHCAP'... >>>> >>>> remote: Counting objects: 63, done. >>>> >>>> remote: Compressing objects: 100% (55/55), done. >>>> >>>> remote: Total 63 (delta 12), reused 7 (delta 4), pack-reused 0 >>>> >>>> Receiving objects: 100% (63/63), 57.24 KiB | 0 bytes/s, done. >>>> >>>> Resolving deltas: 100% (12/12), done. >>>> >>>> Checking connectivity... done. >>>> >>>> cwarden$ cd COHCAP >>>> >>>> COHCAP cwarden$ git remote -v >>>> >>>> origin g...@github.com:cwarden45/COHCAP.git (fetch) >>>> >>>> origin g...@github.com:cwarden45/COHCAP.git (push) >>>> >>>> COHCAP cwarden$ git remote add upstream g...@git.bioconductor.org: >>>> packages/COHCAP.git >>>> >>>> BR11252:COHCAP cwarden$ git remote -v >>>> >>>> origin g...@github.com:cwarden45/COHCAP.git (fetch) >>>> >>>> origin g...@github.com:cwarden45/COHCAP.git (push) >>>> >>>> upstream g...@git.bioconductor.org:packages/COHCAP.git (fetch) >>>> >>>> upstream g...@git.bioconductor.org:packages/COHCAP.git (push) >>>> >>>> COHCAP cwarden$ git fetch upstream >>>> >>>> warning: no common commits >>>> >>>> remote: Counting objects: 485, done. >>>> >>>> remote: Compressing objects: 100% (479/479), done. >>>> >>>> remote: Total 485 (delta 328), reused 0 (delta 0) >>>> >>>> Receiving objects: 100% (485/485), 110.22 KiB | 0 bytes/s, done. >>>> >>>> Resolving deltas: 100% (328/328), done. >>>> >>>> From git.bioconductor.org:packages/COHCAP >>>> >>>> * [new branch] RELEASE_2_14 -> upstream/RELEASE_2_14 >>>> >>>> * [new branch] RELEASE_3_0 -> upstream/RELEASE_3_0 >>>> >>>> * [new branch] RELEASE_3_1 -> upstream/RELEASE_3_1 >>>> >>>> * [new branch] RELEASE_3_2 -> upstream/RELEASE_3_2 >>>> >>>> * [new branch] RELEASE_3_3 -> upstream/RELEASE_3_3 >>>> >>>> * [new branch] RELEASE_3_4 -> upstream/RELEASE_3_4 >>>> >>>> * [new branch] RELEASE_3_5 -> upstream/RELEASE_3_5 >>>> >>>> * [new branch] master -> upstream/master >>>> >>>> COHCAP cwarden$ git merge upstream/master >>>> >>>> Auto-merging vignettes/COHCAP.Rnw >>>> >>>> CONFLICT (add/add): Merge conflict in vignettes/COHCAP.Rnw >>>> >>>> Auto-merging man/COHCAP.site.Rd >>>> >>>> CONFLICT (add/add): Merge conflict in man/COHCAP.site.Rd >>>> >>>> Auto-merging man/COHCAP.qc.Rd >>>> >>>> CONFLICT (add/add): Merge conflict in man/COHCAP.qc.Rd >>>> >>>> Auto-merging man/COHCAP.integrate.avg.by.site.Rd >>>> >>>> CONFLICT (add/add): Merge conflict in man/COHCAP.integrate.avg.by.si >>>> te.Rd >>>> >>>> Auto-merging man/COHCAP.integrate.avg.by.island.Rd >>>> >>>> CONFLICT (add/add): Merge conflict in man/COHCAP.integrate.avg.by.is >>>> land.Rd >>>> >>>> Auto-merging man/COHCAP.denovo.Rd >>>> >>>> CONFLICT (add/add): Merge conflict in man/COHCAP.denovo.Rd >>>> >>>> Auto-merging man/COHCAP.avg.by.site.Rd >>>> >>>> CONFLICT (add/add): Merge conflict in man/COHCAP.avg.by.site.Rd >>>> >>>> Auto-merging man/COHCAP.avg.by.island.Rd >>>> >>>> CONFLICT (add/add): Merge conflict in man/COHCAP.avg.by.island.Rd >>>> >>>> Auto-merging man/COHCAP.annotate.Rd >>>> >>>> CONFLICT (add/add): Merge conflict in man/COHCAP.annotate.Rd >>>> >>>> Auto-merging man/COHCAP.BSSeq.preprocess.Rd >>>> >>>> CONFLICT (add/add): Merge conflict in man/COHCAP.BSSeq.preprocess.Rd >>>> >>>> Auto-merging NAMESPACE >>>> >>>> CONFLICT (add/add): Merge conflict in NAMESPACE >>>> >>>> Auto-merging DESCRIPTION >>>> >>>> CONFLICT (add/add): Merge conflict in DESCRIPTION >>>> >>>> Auto-merging CHANGES >>>> >>>> CONFLICT (add/add): Merge conflict in CHANGES >>>> >>>> [modified files to keep changes intended for SVN Bioconductor >>>> repository] >>>> >>>> COHCAP cwarden$ git add CHANGES >>>> >>>> COHCAP cwarden$ git add DESCRIPTION >>>> >>>> COHCAP cwarden$ git add NAMESPACE >>>> >>>> COHCAP cwarden$ git add man/COHCAP.BSSeq.preprocess.Rd >>>> >>>> COHCAP cwarden$ git add man/COHCAP.annotate.Rd >>>> >>>> COHCAP cwarden$ git add man/COHCAP.avg.by.island.Rd >>>> >>>> COHCAP cwarden$ git add man/COHCAP.avg.by.site.Rd >>>> >>>> COHCAP cwarden$ git add man/COHCAP.denovo.Rd >>>> >>>> COHCAP cwarden$ git add man/COHCAP.integrate.avg.by.island.Rd >>>> >>>> COHCAP cwarden$ git add man/COHCAP.integrate.avg.by.site.Rd >>>> >>>> COHCAP cwarden$ git add man/COHCAP.qc.Rd >>>> >>>> COHCAP cwarden$ git add man/COHCAP.site.Rd >>>> >>>> COHCAP cwarden$ git add man/COHCAP.reformatFinalReport.Rd >>>> >>>> COHCAP cwarden$ git add vignettes/COHCAP.Rnw >>>> >>>> COHCAP cwarden$ git add R/COHCAP.reformatFinalReport.R >>>> >>>> COHCAP cwarden$ git push upstream master >>>> >>>> To g...@git.bioconductor.org:packages/COHCAP.git >>>> >>>> ! [rejected] master -> master (non-fast-forward) >>>> >>>> error: failed to push some refs to 'g...@git.bioconductor.org: >>>> packages/COHCAP.git' >>>> >>>> hint: Updates were rejected because the tip of your current branch is >>>> behind >>>> >>>> hint: its remote counterpart. Integrate the remote changes (e.g. >>>> >>>> hint: 'git pull ...') before pushing again. >>>> >>>> hint: See the 'Note about fast-forwards' in 'git push --help' for >>>> details. >>>> >>>> Can you please help me troubleshoot updating the Bioconductor COHCAP >>>> repository via SSH? >>>> >>>> Thanks, >>>> >>>> Charles >>>> >>>> On Sun, Sep 3, 2017 at 7:07 PM, Turaga, Nitesh < >>>> nitesh.tur...@roswellpark.org> wrote: >>>> >>>> > Hi >>>> > >>>> > You are using HTTPS protocol for cloning your repository. You need to >>>> use >>>> > SSH. >>>> > >>>> > >>>> > http://bioconductor.org/developers/how-to/git/new-package-workflow/ >>>> > >>>> > • SSH (developer) read / write access: >>>> g...@git.bioconductor.org >>>> > • HTTPS (public) read only access: >>>> https://git.bioconductor.org >>>> > >>>> > >>>> > Nitesh >>>> > >>>> > > On Sep 3, 2017, at 4:30 PM, Charles Warden <cwarde...@gmail.com> >>>> wrote: >>>> > > >>>> > > Hi Martin and Nitesh, >>>> > > >>>> > > Thanks for your help - I can now clone from the Bioconductor COHCAP >>>> git >>>> > repository, and I'm now working on syncing the GitHub repository and >>>> the >>>> > Bioconductor repository (or at least updating the Bioconductor >>>> repository). >>>> > > >>>> > > I'm testing making a minor change (not affecting functionality, in >>>> the >>>> > "CHANGES" text file) to one of the files from the Bioconductor >>>> repository >>>> > (without trying to sync the repositories), and I get the following >>>> error >>>> > message when I try to push the changes to the Bioconductor repository >>>> > (showing prior commands as well): >>>> > > >>>> > > cwarden$ git clone https://git.bioconductor.org/packages/COHCAP >>>> > > >>>> > > Cloning into 'COHCAP'... >>>> > > >>>> > > remote: Counting objects: 485, done. >>>> > > >>>> > > remote: Compressing objects: 100% (479/479), done. >>>> > > >>>> > > remote: Total 485 (delta 328), reused 0 (delta 0) >>>> > > >>>> > > Receiving objects: 100% (485/485), 107.97 KiB | 0 bytes/s, done. >>>> > > >>>> > > Resolving deltas: 100% (328/328), done. >>>> > > >>>> > > Checking connectivity... done. >>>> > > >>>> > > cwarden$ cd COHCAP >>>> > > >>>> > > COHCAP cwarden$ git checkout master >>>> > > >>>> > > Already on 'master' >>>> > > >>>> > > Your branch is up-to-date with 'origin/master'. >>>> > > >>>> > > [edit file] >>>> > > >>>> > > COHCAP cwarden$ git status >>>> > > >>>> > > On branch master >>>> > > >>>> > > Your branch is up-to-date with 'origin/master'. >>>> > > >>>> > > Changes not staged for commit: >>>> > > >>>> > > (use "git add <file>..." to update what will be committed) >>>> > > >>>> > > (use "git checkout -- <file>..." to discard changes in working >>>> > directory) >>>> > > >>>> > > >>>> > > >>>> > > modified: CHANGES >>>> > > >>>> > > >>>> > > >>>> > > no changes added to commit (use "git add" and/or "git commit -a") >>>> > > >>>> > > COHCAP cwarden$ git commit -a -m "fake commit" >>>> > > >>>> > > [master 225f7ac] fake commit >>>> > > >>>> > > 1 file changed, 1 insertion(+) >>>> > > >>>> > > COHCAP cwarden$ git status >>>> > > >>>> > > On branch master >>>> > > >>>> > > Your branch is ahead of 'origin/master' by 1 commit. >>>> > > >>>> > > (use "git push" to publish your local commits) >>>> > > >>>> > > >>>> > > nothing to commit, working directory clean >>>> > > >>>> > > COHCAP cwarden$ git push origin master >>>> > > >>>> > > fatal: remote error: FATAL: W any packages/COHCAP nobody DENIED by >>>> > fallthru >>>> > > >>>> > > (or you mis-spelled the reponame) >>>> > > >>>> > > >>>> > > I tried this on a couple computers and I get the same error message >>>> with >>>> > the "git push origin master" command. Can you please help me >>>> identify the >>>> > problem, so I can at least update the Bioconductor repository? >>>> > > >>>> > > Thanks, >>>> > > Charles >>>> > > >>>> > > On Thu, Aug 24, 2017 at 11:07 AM, Charles Warden < >>>> cwarde...@gmail.com> >>>> > wrote: >>>> > > Hi Martin and Nitesh, >>>> > > >>>> > > Thanks for your help. >>>> > > >>>> > > I created a public ssh-key, I added it as a deploy key for the >>>> > Bioconductor package, and I provided that key in the git/svn >>>> transition >>>> > Google Doc file. >>>> > > >>>> > > I was trying to provide a key what would only affect the COHCAP >>>> package, >>>> > and not the other projects that are not Bioconductor projects. >>>> Please let >>>> > me know if this still works. >>>> > > >>>> > > Thanks, >>>> > > Charles >>>> > > >>>> > > On Thu, Aug 24, 2017 at 5:59 AM, Martin Morgan < >>>> > martin.mor...@roswellpark.org> wrote: >>>> > > On 08/24/2017 07:27 AM, Turaga, Nitesh wrote: >>>> > > http://bioconductor.org/developers/how-to/git/<http:// >>>> > bioconductor.org/developers/how-to/git/faq/>faq<http:// >>>> > bioconductor.org/developers/how-to/git/faq/>/<http:// >>>> > bioconductor.org/developers/how-to/git/faq/> >>>> > > >>>> > > Get Outlook for Android<https://aka.ms/ghei36> >>>> > > >>>> > > ________________________________ >>>> > > From: Charles Warden <cwarde...@gmail.com> >>>> > > Sent: Wednesday, August 23, 2017 11:32:42 PM >>>> > > To: Turaga, Nitesh >>>> > > Subject: Re: [Bioc-devel] COHCAP GitHub Update >>>> > > >>>> > > Hi Nitesh, >>>> > > >>>> > > I am getting a slightly different error message, now that I am >>>> changing >>>> > to be within the COHCAP directory: >>>> > > >>>> > > ###### Start Code ######## >>>> > > >>>> > > COHCAP cwarden$ git fetch --all >>>> > > >>>> > > Fetching origin >>>> > > >>>> > > Fetching upstream >>>> > > >>>> > > Permission denied (publickey). >>>> > > >>>> > > this means that you do not have permissions to access your >>>> repository. >>>> > This is probably because you, as an existing svn account holder, have >>>> not >>>> > submitted an 'ssh' key to Bioconductor. >>>> > > >>>> > > The things you need to do are >>>> > > >>>> > > 1. create an ssh key pair, and submit the public key to your >>>> github >>>> > account. Follow the link to 'add your public key to your GitHub >>>> account' in >>>> > step 2 of >>>> > > >>>> > > http://bioconductor.org/developers/how-to/git/maintain-gith >>>> ub-bioc/ >>>> > > >>>> > > 2. submit your request for ssh access to git.bioconductor.org, >>>> > following step 1 of >>>> > > >>>> > > http://bioconductor.org/developers/how-to/git/new-package-w >>>> orkflow/ >>>> > > >>>> > > (I will update the instructions at http://bioconductor.org/ >>>> > developers/how-to/git/maintain-github-bioc/ to include this step. >>>> > > >>>> > > 3. Wait 24 hours for manual processing >>>> > > >>>> > > 4. Try again >>>> > > >>>> > > some more below... >>>> > > >>>> > > >>>> > > >>>> > > fatal: Could not read from remote repository. >>>> > > >>>> > > >>>> > > Please make sure you have the correct access rights >>>> > > >>>> > > and the repository exists. >>>> > > >>>> > > error: Could not fetch upstream >>>> > > >>>> > > ###### End Code ######## >>>> > > >>>> > > I also don't see COHCAP when I search the Bioconductor repository >>>> (when >>>> > searching https://github.com/Bioconductor?utf8=%E2%9C%93&q= >>>> > COHCAP&type=&language=), and I also can't clone anything directory >>>> from >>>> > Bioconductor: >>>> > > >>>> > > github.com/Bioconductor contains public versions of repositories >>>> > maintained by the Bioconductor core team; yours will not appear there. >>>> > > >>>> > > >>>> > > ###### Start Code ######## >>>> > > >>>> > > cwarden$ git clone g...@git.bioconductor.org:packages/COHCAP >>>> > > >>>> > > Cloning into 'COHCAP'... >>>> > > >>>> > > Permission denied (publickey). >>>> > > >>>> > > fatal: Could not read from remote repository. >>>> > > >>>> > > >>>> > > Please make sure you have the correct access rights >>>> > > >>>> > > and the repository exists. >>>> > > >>>> > > ###### End Code ######## >>>> > > >>>> > > I have my Bioconductor SVN username and password, but does something >>>> > need to be initialized with the new git system (where I'll have a new >>>> > Bioconductor username and password)? >>>> > > >>>> > > Thanks, >>>> > > Charles >>>> > > >>>> > > On Wed, Aug 23, 2017 at 2:18 PM, Turaga, Nitesh < >>>> > nitesh.tur...@roswellpark.org<mailto:nitesh.tur...@roswellpark.org>> >>>> > wrote: >>>> > > Hi >>>> > > >>>> > > On Aug 23, 2017, at 5:13 PM, Charles Warden <cwarde...@gmail.com >>>> <mailto: >>>> > cwarde...@gmail.com>> wrote: >>>> > > >>>> > > Hi, >>>> > > >>>> > > I downloaded code for the COHCAP Bioconductor SVN repository ( >>>> > > https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/COHCAP/ >>>> ), >>>> > made >>>> > > some changes, and then tried to commit those changes. However, I >>>> got an >>>> > > error message that the SVN repository is locked, so the changes >>>> could not >>>> > > be uploaded because of a switch to git. >>>> > > >>>> > > I have a GitHub account, and I uploaded the COHCAP code (with the >>>> latest >>>> > > round of changes) to GitHub: >>>> > > >>>> > > https://github.com/cwarden45/COHCAP >>>> > > >>>> > > So far so good. >>>> > > >>>> > > However, I am not sure how to make this the new Bioconductor >>>> > repository. I >>>> > > am trying to follow the instructions available here: >>>> > > >>>> > > http://bioconductor.org/developers/how-to/git/sync- >>>> > existing-repositories/ >>>> > > >>>> > > However, if I run the command *git remote add upstream >>>> > > g...@git.bioconductor.org:packages/COHCAP.gi**t*, then I get an >>>> error >>>> > > message: *fatal: Not a git repository.* >>>> > > >>>> > > >>>> > > Can you paste the command and the error message as is, this >>>> formatting >>>> > seems off. >>>> > > >>>> > > Can you please help me update the COHCAP Bioconductor repository and >>>> > > understand how this is now managed through GitHub? >>>> > > >>>> > > Also, I posted this question on the Support forum, but that may >>>> have not >>>> > > been the right venue. So, I apologize for the confusion. >>>> > > >>>> > > Thanks, >>>> > > >>>> > > Charles >>>> > > >>>> > > [[alternative HTML version deleted]] >>>> > > >>>> > > _______________________________________________ >>>> > > Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org> mailing >>>> list >>>> > > https://stat.ethz.ch/mailman/listinfo/bioc-devel >>>> > > >>>> > > >>>> > > >>>> > > This email message may contain legally privileged and/or >>>> confidential >>>> > information. If you are not the intended recipient(s), or the >>>> employee or >>>> > agent responsible for the delivery of this message to the intended >>>> > recipient(s), you are hereby notified that any disclosure, copying, >>>> > distribution, or use of this email message is prohibited. If you have >>>> > received this message in error, please notify the sender immediately >>>> by >>>> > e-mail and delete this email message from your computer. Thank you. >>>> > > >>>> > > >>>> > > >>>> > > This email message may contain legally privileged and/or >>>> confidential >>>> > information. If you are not the intended recipient(s), or the >>>> employee or >>>> > agent responsible for the delivery of this message to the intended >>>> > recipient(s), you are hereby notified that any disclosure, copying, >>>> > distribution, or use of this email message is prohibited. If you have >>>> > received this message in error, please notify the sender immediately >>>> by >>>> > e-mail and delete this email message from your computer. Thank you. >>>> > > [[alternative HTML version deleted]] >>>> > > >>>> > > _______________________________________________ >>>> > > Bioc-devel@r-project.org mailing list >>>> > > https://stat.ethz.ch/mailman/listinfo/bioc-devel >>>> > > >>>> > > >>>> > > >>>> > > This email message may contain legally privileged and/or >>>> confidential >>>> > information. If you are not the intended recipient(s), or the >>>> employee or >>>> > agent responsible for the delivery of this message to the intended >>>> > recipient(s), you are hereby notified that any disclosure, copying, >>>> > distribution, or use of this email message is prohibited. If you have >>>> > received this message in error, please notify the sender immediately >>>> by >>>> > e-mail and delete this email message from your computer. Thank you. >>>> > > >>>> > > >>>> > >>>> > >>>> > >>>> > This email message may contain legally privileged and/or confidential >>>> > information. If you are not the intended recipient(s), or the >>>> employee or >>>> > agent responsible for the delivery of this message to the intended >>>> > recipient(s), you are hereby notified that any disclosure, copying, >>>> > distribution, or use of this email message is prohibited. If you have >>>> > received this message in error, please notify the sender immediately >>>> by >>>> > e-mail and delete this email message from your computer. Thank you. >>>> > >>>> >>>> [[alternative HTML version deleted]] >>>> >>>> _______________________________________________ >>>> Bioc-devel@r-project.org mailing list >>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel >>>> >>> >>> >>> >>> -- >>> Sean Davis, MD, PhD >>> Center for Cancer Research >>> National Cancer Institute >>> National Institutes of Health >>> Bethesda, MD 20892 >>> https://seandavi.github.io/ >>> https://twitter.com/seandavis12 >>> >> >> > > > -- > Sean Davis, MD, PhD > Center for Cancer Research > National Cancer Institute > National Institutes of Health > Bethesda, MD 20892 > https://seandavi.github.io/ > https://twitter.com/seandavis12 > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
