Re: [Bioc-devel] Bioconductor git server beta testing begins now.

2017-07-10 Thread Diego Diez
Hi Nitesh, Thank you for the explanation. Now everything is clear. Best, Diego On Mon, Jul 10, 2017 at 10:55 PM, Turaga, Nitesh wrote: > Hi Diego, > > This is a good question. > > Please note, that when you do a 'git clone¹, you are getting the commit > history of every branch, and master(trunk

Re: [Bioc-devel] Bioconductor git server beta testing begins now.

2017-07-10 Thread Turaga, Nitesh
Hi Diego, This is a good question. Please note, that when you do a 'git clone¹, you are getting the commit history of every branch, and master(trunk) locally. Git stores the log of the commit history(trees, commits and blobs) locally in the .git/object directory. When you checkout an svn branch

Re: [Bioc-devel] Bioconductor git server beta testing begins now.

2017-07-09 Thread Diego Diez
Dear all, Great to know that the git transition is moving forward. I tested cloning (https) several packages and I noticed a significant difference in the repository size between svn and git. Two examples showing the output (svn/git) of du -k: Biobase: 4968 / 8720 limma: 6284 / 20296 Looking bri

Re: [Bioc-devel] Bioconductor git server beta testing begins now.

2017-07-07 Thread Turaga, Nitesh
Dear Maintainers, For those of you who have submitted your public github id instead of your public SSH key, please make sure that the link `www.github.com/.keys` is valid and shows your SSH key. If that is not valid, we are not able to add your SSH key to the bioconductor server. Thanks, Nites

[Bioc-devel] Bioconductor git server beta testing begins now.

2017-07-05 Thread Turaga, Nitesh
>Dear Maintainers > >As announced earlier this year, Bioconductor is moving version control >systems from SVN to Git. > >The plan > > >- Software, experiment data, and workflow packages will be maintained > as git repositories created to capture the full commit history of > each packa