Dear all, Great to know that the git transition is moving forward. I tested cloning (https) several packages and I noticed a significant difference in the repository size between svn and git. Two examples showing the output (svn/git) of du -k:
Biobase: 4968 / 8720 limma: 6284 / 20296 Looking briefly at the .git folder inside the repositories it seems the .pack file inside .git/objects/pack takes most of the overweight. I wonder if this is expected? Thank you. Diego PS: commands used to obtain the repositories: git clone https://git.bioconductor.org/packages/limma svn co https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/limma --username readonly On Fri, Jul 7, 2017 at 9:42 PM, Turaga, Nitesh <nitesh.tur...@roswellpark.org> wrote: > Dear Maintainers, > > For those of you who have submitted your public github id instead of your > public SSH key, please make sure that the link > `www.github.com/<username>.keys` is valid and shows your SSH key. > > If that is not valid, we are not able to add your SSH key to the > bioconductor server. > > Thanks, > > Nitesh > > >>>Dear Maintainers >>> >>>As announced earlier this year, Bioconductor is moving version control >>>systems from SVN to Git. >>> >>>The plan >>>------------ >>> >>>- Software, experiment data, and workflow packages will be maintained >>> as git repositories created to capture the full commit history of >>> each package. (the commit history of the 'data_store' portion of >>> data experiment packages will unfortunately not carry forward to >>> git). >>> >>>- Read-only (user) access for each package is available via https, >>> e.g., >>> >>> git clone >>>https://git.bioconductor.org/packages/SummarizedExperiment >>> >>>- Read-write (developer) access for each package is available via ssh, >>>e.g., >>> >>> git clone g...@git.bioconductor.org:packages/SummarizedExperiment >>> >>> Developers MUST SHARE public key(s) with Bioconductor. The process >>> for this during the beta phase is outlined below. >>> >>>- The build system and other core infrastructure will use >>> git.bioconductor.org as the canonical source after the transition. >>> >>>- Developers may wish to independently clone and maintain github or >>> other repositories to support their package. Developers are >>> responsible for pushing changes from these cloned repositories to >>> the canonical source. >>> >>>- https://github.com/Bioconductor-mirror will be removed after the >>> transition. >>> >>>Beta testers >>>---------------- >>> >>>We are starting Beta testing now. We encourage as many people as >>>possible to become beta-testers, either as users (via git clone >>>https://...) or maintainers (via git clone git@...). >>> >>>All software, data experiment, and workflow packages are available at >>> >>> (read-only) git clone >>>https://git.bioconductor.org/packages/<package> >>> (read / write) git clone >>>g...@git.bioconductor.org:packages/<package> >>> >>>These are STATIC SNAPSHOTS of SVN. Developers are encouraged to commit >>>to these repositories, but the commits are not propagated to svn and >>>will be lost at the end of the beta phase. >>> >>>For maintainers, Bioconductor needs your SSH public key. We have >>>prepared a Google form for this >>> >>> https://goo.gl/forms/eg36vcBkIUjfZfLe2 >>> >>>The form requires your Bioconductor provided SVN username, and your >>>Github user name (to retrieve your public keys from >>>https://github.com/<your-github-id>.keys) OR SSH key. Currently, the >>>form is processed on an approximately daily basis, so there is a delay >>>between credential submission and developer access. >>> >>>(IMPORTANT) As a beta tester, we ask that you work through the >>>'scenarios' at >>> >>> https://github.com/Bioconductor/bioc_git_transition/tree/master/doc >>> >>>Package authors and maintainers, please take the extra measure to >>>check that your package history is complete to July 4th, i.e commit >>>history, >>>files, folders and all Bioconductor components. >>> >>>If you are new to Git or Github, there are learning materials online >>>https://try.github.io >>> >>>We encourage pull-requests on documentation. Please post other >>>beta-test feedback from the experience with the new git server to this >>>mailing list. >>> >>>Transition >>>-------------- >>> >>>Important Dates: >>> >>>Transition: on date T, tentatively July 31st. >>> >>>Until July 30th 2017: >>> >>> Beta testing phase. >>> >>> >>>July 26th 2017: >>> >>> Developer day demo session on Bioconductor's GIT transition/usage >>> going forward. (30-45 mins) Be sure to attend if you are at >>> Bioc2017, Boston. Slides will be made public. >>> >>>T - 2: Final SVN snapshot of data experiment packages >>> >>> No more SVN commits to Data Experiment packages. >>> >>>T: Day of transition. >>> >>> All SVN commits to software, experiment data, and workflow >>> repositories are stopped, forever. >>> >>> Git repositories are updated to most recent svn version on day T. >>> (We estimate that this will take about 6 hours; no commits >>> possible on either svn or git). >>> >>> Git commits resume. Please make sure to commit to >>> g...@git.bioconductor.org. >>> >>> Only git sever commits moving forward. >>> >>>This is an important step for the infrastructure of the project. If >>>you have questions please reply to this email, i.e. to the bioc-devel >>>mailing list. If there are any issues with individual packages, make >>>sure to list them out. >>> >>>Best Regards, >>> >>>Nitesh >>>Bioconductor Core Team >> > > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
