Re: [Bioc-devel] New ExperimentHub resource and some related questions

2018-12-23 Thread Martin Morgan
-- Message: 2 Date: Thu, 20 Dec 2018 12:05:57 + From: "Shepherd, Lori" To: "Lu, Dongyi (Lambda)" , "bioc-devel

Re: [Bioc-devel] New ExperimentHub resource and some related questions

2018-12-21 Thread Lu, Dongyi (Lambda)
hbors (Obenchain, Valerie) -- Message: 1 Date: Thu, 20 Dec 2018 12:00:20 + From: Aaron Lun To: bioc-devel Subject: Re: [Bioc-devel] New ExperimentHub resource and some related questions Message-ID: <9bf95433-af04-431b-b71d-62425195

Re: [Bioc-devel] New ExperimentHub resource and some related questions

2018-12-20 Thread Shepherd, Lori
rk 14263 From: Bioc-devel on behalf of Lu, Dongyi (Lambda) Sent: Wednesday, December 19, 2018 8:42:39 PM To: bioc-devel@r-project.org Subject: [Bioc-devel] New ExperimentHub resource and some related questions Hi everyone, I�m writing a package (biocViews SinigleCell) that converts files of

Re: [Bioc-devel] New ExperimentHub resource and some related questions

2018-12-20 Thread Aaron Lun
I presume your package is not actually called “SingleCell” (in point 1). This would be pretty confusing wjem compared to the simpleSingleCell package, the SingleCellExperiment package, and the SingleCell biocViews term itself. It would probably make more sense to call it BUStoolsR or some other

[Bioc-devel] New ExperimentHub resource and some related questions

2018-12-19 Thread Lu, Dongyi (Lambda)
Hi everyone, I’m writing a package (biocViews SinigleCell) that converts files of the BUS format (standing for Barcode, UMI, Set, see https://www.biorxiv.org/content/early/2018/11/21/472571) into a sparse matrix in R that can be used in Seurat and SingleCellExperiment. In order to write the ex