There is a DispatchClass - FilePath - That will download the file and give you the path to the file in the cache location rather than loading it to the R session - You then can use the file path in whatever read/load/etc method you deem fit.
RDataClass - I would either say character or matrix - knowing that there will be instructions on how to load the data somewhere in your package - Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Lu, Dongyi (Lambda) <d...@caltech.edu> Sent: Wednesday, December 19, 2018 8:42:39 PM To: bioc-devel@r-project.org Subject: [Bioc-devel] New ExperimentHub resource and some related questions Hi everyone, I�m writing a package (biocViews SinigleCell) that converts files of the BUS format (standing for Barcode, UMI, Set, see https://www.biorxiv.org/content/early/2018/11/21/472571) into a sparse matrix in R that can be used in Seurat and SingleCellExperiment. In order to write the examples and the vignette, I�m also putting the data itself into a package for ExperimentHub. The data used here are some mixed human and mouse cells from 10x. Here are my questions: 1. In the documentation for `ExperimentHubData::makeExperimentHubMetadata`, the fields `RDataClass` and `DispatchClass` are required. However, this accompanying dataset package is meant to download text files (generated by command line tools outside R) to disk rather than into the R session, and it�s the job of the SingleCell package to converts the text files into a sparse matrix. There is a website documenting how the command line tools were used to generate the text files. So is this dataset still appropriate for ExperimentHub? 2. If it is appropriate, then what shall I put in `RDataClass` and `DispatchClass`? Thanks, Lambda [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]]
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