Re: [Bioc-devel] How to integrate code from a package not available on bioconductor

2021-02-11 Thread Kasper Daniel Hansen
ritical here. > >> > >> Martin > >> > >> From: Ana Carolina Leote > >> Date: Wednesday, February 10, 2021 at 10:24 AM > >> To: "Kern, Lori" > >> Cc: Martin Morgan , Wolfgang Huber < > >> wolfgang.hu...@embl.org&

Re: [Bioc-devel] How to integrate code from a package not available on bioconductor

2021-02-10 Thread Ana Carolina Leote
t; >> Martin >> >> From: Ana Carolina Leote >> Date: Wednesday, February 10, 2021 at 10:24 AM >> To: "Kern, Lori" >> Cc: Martin Morgan , Wolfgang Huber < >> wolfgang.hu...@embl.org>, "bioc-devel@r-project.org" < >> bioc-d

Re: [Bioc-devel] How to integrate code from a package not available on bioconductor

2021-02-10 Thread Vincent Carey
quot; > Cc: Martin Morgan , Wolfgang Huber < > wolfgang.hu...@embl.org>, "bioc-devel@r-project.org" < > bioc-devel@r-project.org> > Subject: Re: [Bioc-devel] How to integrate code from a package not > available on bioconductor > > My motivation to include this pa

Re: [Bioc-devel] How to integrate code from a package not available on bioconductor

2021-02-10 Thread Martin Morgan
mailto:wolfgang.hu...@embl.org>> Cc: bioc-devel@r-project.org<mailto:bioc-devel@r-project.org> mailto:bioc-devel@r-project.org>> Subject: Re: [Bioc-devel] How to integrate code from a package not available on bioconductor If the package is already widely used, then I guess it provide

Re: [Bioc-devel] How to integrate code from a package not available on bioconductor

2021-02-10 Thread Ana Carolina Leote
-- > *From:* Bioc-devel on behalf of Martin > Morgan > *Sent:* Wednesday, February 10, 2021 9:36 AM > *To:* Ana Carolina Leote ; Wolfgang Huber < > wolfgang.hu...@embl.org> > *Cc:* bioc-devel@r-project.org > *Subject:* Re: [Bioc-devel]

Re: [Bioc-devel] How to integrate code from a package not available on bioconductor

2021-02-10 Thread Kern, Lori
] How to integrate code from a package not available on bioconductor If the package is already widely used, then I guess it provides useful functionality, and so your package doesn't have to provide that functionality, so perhaps a better solution is to refer users to the unsupported pac

Re: [Bioc-devel] How to integrate code from a package not available on bioconductor

2021-02-10 Thread Martin Morgan
e Cancer Center > > > > Department of Biostatistics & Bioinformatics > > > > Elm & Carlton Streets > > > > Buffalo, New York 14263 > > > > ____ > > From: Bioc-devel on

Re: [Bioc-devel] How to integrate code from a package not available on bioconductor

2021-02-10 Thread Wolfgang Huber
bruary 10, 2021 5:14 AM > To: bioc-devel@r-project.org > Subject: [Bioc-devel] How to integrate code from a package not available on > bioconductor > > Dear all, > > I am a package maintainer and would like to add a functionality that > depends on another package which

Re: [Bioc-devel] How to integrate code from a package not available on bioconductor

2021-02-10 Thread Ana Carolina Leote
n Streets > > > > Buffalo, New York 14263 > > > > ________ > > From: Bioc-devel on behalf of Ana > Carolina Leote > > Sent: Wednesday, February 10, 2021 5:14 AM > > To: bioc-devel@r-project.org > > Subject: [Bioc-devel] How to i

Re: [Bioc-devel] How to integrate code from a package not available on bioconductor

2021-02-10 Thread Vincent Carey
nformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > > > From: Bioc-devel on behalf of Ana > Carolina Leote > Sent: Wednesday, February 10, 2021 5:14 AM > To: bioc-devel@r-project.org > Subject: [Bioc-devel] How to integrate code

Re: [Bioc-devel] How to integrate code from a package not available on bioconductor

2021-02-10 Thread Kern, Lori
Elm & Carlton Streets Buffalo, New York 14263 From: Bioc-devel on behalf of Ana Carolina Leote Sent: Wednesday, February 10, 2021 5:14 AM To: bioc-devel@r-project.org Subject: [Bioc-devel] How to integrate code from a package not available on bioconductor Dear

[Bioc-devel] How to integrate code from a package not available on bioconductor

2021-02-10 Thread Ana Carolina Leote
Dear all, I am a package maintainer and would like to add a functionality that depends on another package which is not available in bioconductor, only via GitHub. I would like to make the necessary changes in order to be able to use their code in my package. Can anyone point me towards the best wa