On Wed, Feb 10, 2021 at 8:32 AM Kern, Lori <lori.sheph...@roswellpark.org> wrote:
> Have you reached out to the maintainer of the github package to see if > they would plan on submitting to CRAN or Bioconductor? > If they do not, you could see if they are okay with you including the > code in your package and then clearly indicate their authorship in the man > pages and by giving contributor credit in the DESCRIPTION. They might also > include CITATION information in their package to include? > > Others might have additional thoughts? > > This is what I would have suggested. Also, if the github author needs encouragement about submission to a regulated ecosystem, have them get in touch with us. > Cheers, > > > Lori Shepherd > > Bioconductor Core Team > > Roswell Park Comprehensive Cancer Center > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > > ________________________________ > From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Ana > Carolina Leote <anacarolinale...@gmail.com> > Sent: Wednesday, February 10, 2021 5:14 AM > To: bioc-devel@r-project.org <bioc-devel@r-project.org> > Subject: [Bioc-devel] How to integrate code from a package not available > on bioconductor > > Dear all, > > I am a package maintainer and would like to add a functionality that > depends on another package which is not available in bioconductor, only via > GitHub. I would like to make the necessary changes in order to be able to > use their code in my package. Can anyone point me towards the best way to > proceed without undermining the authorship of the original developers? Is > copying their code to my package and editing it to bioconductor standards > appropriate? > > Thank you and best wishes, > Carolina > > *Ana Carolina Leote* > *MSc. Biological Engineering* > *PhD student at the Cologne Graduate School for Ageing Research* > *Cellular networks and systems biology (Beyer group), **CECAD Research > Center* > > https://secure-web.cisco.com/1sN_yjFZ4rXsNHMf8Fp8CJTySgKw-1exyK2uoJVgve2HB-ffaKVZpjVqnqKkiHfvj-8XfBD5L-E-u5CSB1GVD7eouovHeu4HCMh60N2H2o2WA8SOPodHnGfUgo8J3fWYeoSrQCiNJ5M4yE2VTnUi-WGlGdJeBDFxKTQwTFVThCjoTyAwk1tTdVAznZxVTGkCNBmBuV1Na-a0-81QaIYra4grO9-57FesPlxZIA0WUU9icoS3LgqlPTUhsmLZUM0NmejCSrTNSDA9AzDs7tB66TW4lBTvaNpOHMrk5wPCYIPckLqpDkVL3HnRSiWmXdWJE/https%3A%2F%2Fwww.linkedin.com%2Fin%2Fanacarolinaleote%2F > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > > https://secure-web.cisco.com/1vxzYOt1Hk0jYyShxe8B714l2GGAvh6Qvfo2Ey_49Ro47iSw83aMqNIB5Qv3keiqGApswE2x6TuWzoZjp-NJuEJcrt-skDYLR1Lsd0m1gCdOno-5vOXu1DHnuKsRkZQEyXRX00TjWpnBjbIwuJq5ll1xYmpurSpXNAagbyUQpcfZ136DgLhfGEM63BY-2KzMOwYsXqzpFhqcGhYhR1BkRDJBlIK7NjrhbsQ_8f4Hn2n7yvll4i20POhhaeiLBMZwwu0HXiWtT8v6VNA8pbxf7YxHpISCef2JJErtEjx21uA1ZQxeTNYg3X_37zZDJYGcZ/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel > > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > -- The information in this e-mail is intended only for the ...{{dropped:18}} _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
