Re: [Bioc-devel] Moving repository for Bioconductor package

Cc: alan murphy ; Bioc-devel@r-project.org Subject: Re: [Bioc-devel] Moving repository for Bioconductor package > Secondly, does anyone have a good approach for keeping a mirror of it at the > url in the lab's github since this is the link we reference in the > publ

[Bioc-devel] Moving repository for Bioconductor package

Hi all, I'm the maintainer for MungeSumstats package and I will be leaving my current lab in the near future. Currently, the package code is hosted in the lab github but I want to move it to my personal github - What are the steps for setting up

Re: [Bioc-devel] Fw: MungeSumstats Bioconductor

h? Cheers, Alan. From: Herv� Pag�s Sent: Tuesday 6 February 2024 18:58 To: alan murphy ; Bioc-devel@r-project.org Subject: Re: [Bioc-devel] Fw: MungeSumstats Bioconductor Hi Alan, The specs of the Linux servers have not changed. However we've recently o

[Bioc-devel] Fw: MungeSumstats Bioconductor

Hi, I'm the maintainer of the MungeSumstats package which is currently failing on the devel nebbiolo1 Linux platform because of RAM requirements of the unit tests. These tests use large reference datasets (like BSgenome.Hsapiens.1000genomes.hs37d5::BSgenome.Hsapiens.1000genomes.hs37d5) which c

[Bioc-devel] Dev check runtime on all machines

Hi all, I'm the developer of the MungeSumstats package which is currently timing out on the nightly builds for windows (riesling1) but doesn't have any errors: https://bioconductor.org/checkResults/3.14/bioc-LATEST/MungeSumstats/riesling1-checksrc.html. My question is whether there is a reason

[Bioc-devel] R CMD CHECK warning -

Hi all, I am working on MungeSumstats(https://github.com/neurogenomics/MungeSumstats) which is being considered for addition to Bioconductor (issue: https://github.com/Bioconductor/Contributions/issues/2043). To avoid importing large reference genomes in my package, I recently put them in as

Re: [Bioc-devel] Reference inst/extdata files in vignette

:26 To: alan murphy ; bioc-devel@r-project.org Subject: Re: [Bioc-devel] Reference inst/extdata files in vignette Hi Alan, On 4/22/21 3:54 AM, alan murphy wrote: > Hi all, > > I'm working on the development of > MungeSumstats(https://github.com/neurogenomics/MungeSumstats) an

[Bioc-devel] Reference inst/extdata files in vignette

Hi all, I'm working on the development of MungeSumstats(https://github.com/neurogenomics/MungeSumstats) and am trying to reference raw data files (txt and VCF) in my vignette. These files are stored in `inst/extdata` but when I try load then with the below it fails on Bioconductor checks but w

Re: [Bioc-devel] Error building package

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