Hi all,
I'm working on the development of
MungeSumstats(https://github.com/neurogenomics/MungeSumstats) and am trying to
reference raw data files (txt and VCF) in my vignette. These files are stored
in `inst/extdata` but when I try load then with the below it fails on
Bioconductor checks but will pass local checks:
```
eduAttainOkbayPth <- system.file("extdata","eduAttainOkbay.txt",
package="MungeSumstats")
reformatted <-
MungeSumstats::format_sumstats(path=eduAttainOkbayPth,ref_genome="GRCh37")
```
The error is caused by a validation check I have to ensure the path passed to
`format_sumstats` is valid. Locally this works (see below) but I get an error
on Bioconductor:
```
> file.exists(eduAttainOkbayPth)[1]
TRUE
```
Does anyone know of the correct way to access raw data files like text files?
Kind regards,
Alan.
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