/merida1-checksrc.html.
Any suggestions or workarounds?
Best wishes,
Tim
===
Tim Peters, PhD
Computational Scientist - Immunogenomics Laboratory
Conjoint Lecturer, St Vincent's Healthcare Clinical Campus
Garvan Institute of Medical Research
384 Victoria St., Darlinghur
of
annotation packages.
Best,
Kasper
On Thu, Oct 17, 2019 at 4:08 AM Tim Peters
mailto:t.pet...@garvan.org.au>> wrote:
Hi Hervé (and Reka),
I am having much the same problem on tokay1 with DMRcate
(https://bioconductor.org/checkResults/3.10/bioc-LATEST/DMRcate/tokay1-checksrc.html).
I
=DwIF-g&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=doO3ej8vD58ZBQWVxkHTaCLk-xipbskav8uofJL2syI&s=2BO1kFpXuH1gpxwLxHae_ELnR7g_k9JV-qtslgowQMQ&e=
--
===
Tim Peters, PhD
Bioinformatics Research Officer | Immunogenomics Laboratory | Immu
Tim
On 12/9/19 11:51 pm, Turaga, Nitesh wrote:
Thanks Tim. The assigned reviewer will review your package and provide
suggestions as needed.
Best,
Nitesh
On Sep 12, 2019, at 3:15 AM, Tim Peters
<mailto:t.pet...@garvan.org.au> wrote:
Hi Nitesh,
Thanks, I have transformed DMRcatedata
should become an
experiment hub package.
https://bioconductor.org/packages/devel/bioc/vignettes/ExperimentHub/inst/doc/CreateAnExperimentHubPackage.html
Please take a look that vignette.
Let me know if you have any questions.
Nitesh
On Aug 21, 2019, at 7:49 PM, Tim Peters wrote:
Hello
ou to download and
update Bioconductor, and
then I can sync the new version of DMRcate please?
Best,
Tim
--
===
Tim Peters, PhD
Bioinformatics Research Officer | Immunogenomics Laboratory | Immunology
Division
Garvan Institute of Medical Research
384 Victor
developers investigate this please? The purpose of calling
makeGenomicRatioSetFromMatrix() is to access the chromosome position and ID
from a methylation matrix with probe IDs as rownames. DMR.plot() also needs the
beta values so I am killing 2 birds with 1 stone with this call.
Best,
Tim
-
one under
t.pet...@garvan.org.au<mailto:t.pet...@garvan.org.au><mailto:t.pet...@garvan.org.au><mailto:t.pet...@garvan.org.au>.
I've removed the @csiro.au account and your information (i.e., package
permissions) should by synced up.
Valerie
On 09/11/2018 08:14 PM, Tim Pe
account and your information (i.e., package permissions) should by
synced up.
Valerie
On 09/11/2018 08:14 PM, Tim Peters wrote:
Hi BioC,
I'm attempting to sync the my repo https://github.com/timpeters82/DMRcate-devel
with Bioconductor using the process here:
http://bioconductor.org
wer package "consensus", but not "DMRcate". Can I add DMRcate
myself through some process, or alternatively can I get an admin to do so
please?
Best,
Tim
--
===
Tim Peters, PhD
Bioinformatics Research Officer | Immunogenomics Laboratory | Immunology
Division
gt; package build process? Doing so might give you some hints about which
>> code
>> blocks are the culprits.
>
> Also
>
> > Stangle("DMRcate.Rnw")
> Writing to file DMRcate.R
> > source("DMRcate.R", echo=TRUE, max=Inf)
>
> to generate th
LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_AU.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_3.4.0
Best,
Tim
--
Tim Peters, PhD
Bioinformatics Research Officer | Epi
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