Re: [Bioc-devel] Issue with 'configure' not being executable

2018-10-29 Thread Thomas Sherman
Monday, October 29, 2018 3:44:32 PM To: Thomas Sherman; bioc-devel@r-project.org Subject: Re: [Bioc-devel] Issue with 'configure' not being executable I can’t provide much more help than googling, but it seems like git can be configured to not commit permissions; query and set from wit

Re: [Bioc-devel] Issue with 'configure' not being executable

2018-10-29 Thread Thomas Sherman
From: Martin Morgan Sent: Monday, October 29, 2018 3:23:31 PM To: Thomas Sherman; bioc-devel@r-project.org Subject: Re: [Bioc-devel] Issue with 'configure' not being executable This is what I see in a recent checkout of your package CoGAPS master$ ls -l configure* -rw

Re: [Bioc-devel] Issue with 'configure' not being executable

2018-10-29 Thread Thomas Sherman
Forgot to add, the most recent version of the configure script is in the develop branch, since it was removed from the master branch. https://github.com/FertigLab/CoGAPS/tree/develop From: Bioc-devel on behalf of Thomas Sherman Sent: Monday, October 29

[Bioc-devel] Issue with 'configure' not being executable

2018-10-29 Thread Thomas Sherman
Hello, The latest build for our package (https://github.com/FertigLab/CoGAPS) failed with the error - ERROR: 'configure' exists but is not executable -- see the 'R Installation and Administration Manual' I've run into this before with our CI service, but the issue was fixed there by modify

[Bioc-devel] Including a submodule in the main package repository

2018-06-13 Thread Thomas Sherman
Hi all, I'm a developer for the CoGAPS package (https://github.com/FertigLab/CoGAPS). I'm looking into ways to build our core C++ code as a standalone application and I would like to be able to maintain a single repository for the C++ code and pull that into both repositories for the R package

[Bioc-devel] Permission Denied when pushing to bioc repo

2017-10-16 Thread Thomas Sherman
Hello, I am a developer of the RVS package (https://bioconductor.org/packages/devel/bioc/html/RVS.html). I am having trouble pushing my changes to the Bioconductor repository. I submitted my github account (sherman5) which has the ssh key I'm trying to use. I've also submitted this key expli