ne for the lapply (or the helper
function itself) that the locale environment of the main function should
be used, but this is at least a workable solution.
But many thanks for your suggestion nonetheless :)
Best
Severin
On 19.04.21 11:14, Manders-2, F.M. wrote:
&g
Hi Severin,
I'm not sure what the best practice is, but since your anonymous function is
defined inside your main function, you don't need to supply it with all those
arguments.
This should also work, because R has lexical scoping:
main_function <- function(alot, of, paramters) {
var01 <- foo
Yes, I’ll create a PR.
From: Vincent Carey
Date: Monday, 19 October 2020 at 12:36
To: "Manders-2, F.M." , bioc-devel
Subject: Fwd: [Bioc-devel] Orchid ID invalid according to BiocCheck
forwarding to bioc-devel
-- Forwarded message -
From: Vincent Carey
It seems to be a valid ID:
https://support.orcid.org/hc/en-us/articles/360053289173-Why-does-my-ORCID-iD-have-an-X-
Maybe BiocCheck doesn’t realize the ID can end with an X?
From: Vincent Carey
Date: Monday, 19 October 2020 at 12:20
To: "Manders-2, F.M."
Cc: Alessandro Lussana via
Yes, the X is correct (https://orcid.org/-0001-6197-347X). I don’t know why
I have an X there and not a number.
From: Vincent Carey
Date: Monday, 19 October 2020 at 12:20
To: "Manders-2, F.M."
Cc: Alessandro Lussana via Bioc-devel
Subject: Re: [Bioc-devel] Orchid ID invalid ac
Hi all,
BiocCheck is giving me a note that my ORCID ID is invalid ("Invalid ORCID ID
for Freek Manders").
However, I see nothing wrong with the ID. It also seems to work well on the dev
page of my package (MutationalPatterns)
Clicking on the green ID circle, sends me to my page just fine.
Is the
Hi Emilie,
There are two possible problems I could think of.
Did you remember to load your package in the vignette?
Are your functions exported in the NAMESPACE of your package?
With kind regards,
Freek Manders
On 10/09/2020, 16:38, "Bioc-devel on behalf of Emilie Secherre"
wrote:
Hello,
Hi Joseph,
When you run 'R CMD build' you should get a release tarball, which shouldn't
contain this .git folder. If you perform the 'R CMD check' on the tarball, you
shouldn't get this warning. If you still get the warning, or have other files
that generate this warning, then you could try to
Hi All,
R BiocCheck no longer seems to accept a Author/Maintainer field.
(https://github.com/Bioconductor/BiocCheck/commit/e0176f6591c771774f6cb05d4ff8bc1b145ad10e)
* Checking for valid maintainer...
* ERROR: Remove Maintainer field. Use Authors@R [cre] designation.
However, the package gui
Hi Herve,
The performance of seqlevelStyle when the genome of a GRanges object has been
set, still seems strange to me.
Here is some example code I ran in the Bioconductor:devel docker:
gr <- GRanges(rep(c("chr2", "chr3", "chrM"), 2), IRanges(1:6, 10))
genome(gr) <- "hg19"
seqlevelsStyle(gr) <- "
Hi all,
I’m trying to install the devel version of the ccfindR package to test my
package (MutationalPatterns).
It passed the nightly build tests, so I thought it should work.
I used the development docker container to try and install the package, but it
fails because its dependency “Rmpi” fails
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