[Bioc-devel] Might be worth following thread on R mailing lists

2019-10-17 Thread Aedin Culhane
45] pillar_1.4.2 codetools_0.2-16 pkgload_1.0.2 remotes_2.1.0 [49] modelr_0.1.4 vctrs_0.2.0 httpuv_1.5.1 testthat_2.1.1 [53] cellranger_1.1.0 gtable_0.3.0 xfun_0.8 mime_0.7 [57] xtable_1.8-4 broom_0.5.2 later_0.8.0 memoise_1.1.0 -Joc- -- Aedin Culhane, Ph

[Bioc-devel] Organizing committee for BioC2020

2019-09-18 Thread Aedin Culhane
committee at https://forms.gle/Zs1gn2T9RtQ7Xysv5 Thanks Aedin Culhane, Levi Waldron ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel

[Bioc-devel] RStan/ StanCon - maybe of interest

2017-11-06 Thread Aedin Culhane
Hi I thought I should forward this as it might of of interest to those of you using RStan. StanCon is happening at the beautiful Asilomar conference facility at the beach in Monterey California for three days starting January 10, 2018. We have space for 200 attendees and expect that this will

Re: [Bioc-devel] R logo in help files

2016-05-18 Thread Aedin Culhane
Aedin On 5/18/16 20:20, Martin Morgan wrote: > > > On 05/18/2016 06:40 PM, Aedin Culhane wrote: >> Hi >> The R logo, in Bioc help files is very large when viewed in RStudio help >> window. I don't see the same, when I view R help files. See enclosed >> imag

Re: [Bioc-devel] Bioc-devel Digest, Vol 145, Issue 60

2016-04-20 Thread Aedin Culhane
gt; SummarizedExperiment and rowRanges for RangedSummarizedExperiment > might also be susceptible of simplification. fAnno? > > On Wed, Apr 20, 2016 at 4:10 PM, Aedin Culhane > mailto:ae...@jimmy.harvard.edu>> wrote: > > Hi > Using select/mapIDs to annotate p

Re: [Bioc-devel] Bioc-devel Digest, Vol 145, Issue 60

2016-04-20 Thread Aedin Culhane
Hi Using select/mapIDs to annotate probe IDs is an additional step that confuses many. May I suggest we automatically populate fData with minimal annotation (ProbeID, entrez ID, symbol) if a known platform is detected. We record the version and parameters (eg mapIDs multi=first) used to cre