Re: [Bioc-devel] Package Installation Fails on Linux Kunpeng2 Due to ‘concaveman’ and ‘sf’ Dependencies

2025-03-26 Thread Martin Grigorov
Hi, The problem is a transitive dependency: * installing *source* package ‘sf’ ... ** this is package ‘sf’ version ‘1.0-20’ ** package ‘sf’ successfully unpacked and MD5 sums checked ** using staged installation configure: CC: /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -s

[Bioc-devel] Package Installation Fails on Linux Kunpeng2 Due to ‘concaveman’ and ‘sf’ Dependencies

2025-03-26 Thread Jing Fu
Dear Bioconductor Team, I am the developer of the package CARDspa, which was recently submitted to Bioconductor. While checking the package on the Linux Kunpeng2 platform, the build fails with the following error: ERROR: dependencies �concaveman�, �sf� are not available for package �CARDspa� Pe

[Bioc-devel] Important Release Deadline RELEASE_3_20 Freeze and API Feature Freeze of devel

2025-03-26 Thread Kern, Lori via Bioc-devel
We are moving forward with the 3.21 release reschedule. The RELEASE_3_20 branch will be frozen and no longer accept commits as of this coming Monday March 31. Any changes or bug corrections that are not pushed up by Monday (noon EST) will not be in the Bioconductor 3.20 branch of the package a

Re: [Bioc-devel] mail notification support forum stopped

2025-03-26 Thread James W. MacDonald
It's busted. I think Lori said something about it, but I can't find that now. You could put in an issue https://github.com/Bioconductor/support.bioconductor.org/issues -Original Message- From: Bioc-devel On Behalf Of Hooiveld, Guido via Bioc-devel Sent: Wednesday, March 26, 2025 3:54 A

Re: [Bioc-devel] failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz

2025-03-26 Thread Luca Lepore via Bioc-devel
Hi, I solved it. I had already tried following that link in the past, but it did not work at that moment. I tried again some days ago and now it's all right. Sorry for the inconvenience Best regards, Luca Inviato da Outlook per Android F

[Bioc-devel] mail notification support forum stopped

2025-03-26 Thread Hooiveld, Guido via Bioc-devel
Hi, Apologies if this is not the appropriate place to ask. I noticed that since January 30 I don't receive any mail notifications from the support forum; for example when I reply to a question. To find out why this happens I wonder whether it is just me, or if there is an issue with this feature