Hi, The problem is a transitive dependency:
* installing *source* package ‘sf’ ... ** this is package ‘sf’ version ‘1.0-20’ ** package ‘sf’ successfully unpacked and MD5 sums checked ** using staged installation configure: CC: /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 configure: CXX: /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 checking for gdal-config... no no configure: error: gdal-config not found or not executable. *** Installing this package from source requires the prior *** installation of external software, see for details *** https://r-spatial.github.io/sf/#installing ERROR: configuration failed for package ‘sf’ * removing ‘/home/biocbuild/R/R-devel_2025-02-19/site-library/sf’ There is no such package in the OS repository. I have tried to install it from conda-forge ( https://anaconda.org/conda-forge/libgdal-core/files) but it leads to clashes due to its transitive dependencies ... I will try again ! On Wed, Mar 26, 2025 at 11:37 PM Jing Fu <jing...@brown.edu> wrote: > Dear Bioconductor Team, > > I am the developer of the package CARDspa, which was recently submitted to > Bioconductor. While checking the package on the Linux Kunpeng2 platform, > the build fails with the following error: > > ERROR: dependencies ‘concaveman’, ‘sf’ are not available for package > ‘CARDspa’ > Perhaps try a variation of: > install.packages(c('concaveman', 'sf')) > > These two packages are listed under Imports in my DESCRIPTION file. I > understand that both packages rely on system-level libraries or are not yet > available for ARM-based architectures like Kunpeng2. Is there a preferred > way to handle such dependencies for ARM platforms? > > I look forward to your suggestions. > > Best, > Jing > > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
