Thanks Martin,
Trinh
From: Martin Grigorov
Date: Friday, October 25, 2024 at 12:04 PM
To: Nguyen, Trinh (NIH/NCI) [C]
Cc: bioc-devel@r-project.org
Subject: [EXTERNAL] Re: [Bioc-devel] DeepTarget error built in Linux (openEuler
22.03 LTS-SP1) / aarch64
Hi,
This has been fixed earlier today.
It
Hi,
This has been fixed earlier today.
It should be OK in the next run (tomorrow).
Regards,
Martin
On Fri, 25 Oct 2024 at 17:47, Nguyen, Trinh (NIH/NCI) [C] via Bioc-devel <
bioc-devel@r-project.org> wrote:
>
> Dear Developers,
>
> Could you please guide me what I should do? I received an error
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Dear Developers,
Could you please guide me what I should do? I received an error for the OS
Linux (openEuler 22.03 LTS-SP1) / aarch64 as below:
https://bioconductor.org/checkResults/3.20/bioc-LATEST/DeepTarget/palomino8-buildsrc.html
* installing to library ‘/home/biocbuild/R/R-4.4.1/site-libr
The deadline for fixing packages in preparation for the release is today Friday
October 25th. All packages should be installing, building, and checking without
ERROR in the Bioconductor build report. While you can continue to push changes
past this date, this ensures all changes are reflected i
Hi Matteo,
I see your package failed on kunpeng2 (Linux ARM64) -
https://bioconductor.org/checkResults/3.20/bioc-LATEST/MoonlightR/kunpeng2-buildsrc.html
This issue has been fixed earlier today. It was reported by Oleksii here on
the mailing list.
It should be OK in the next build (tomorrow).
Sorr
Hi,
Can someone guide me why this error came up. When there is no change to the
package made.
Regards,
Tulip.
From: Lee Kraus
Sent: Thursday, October 24, 2024 1:16 PM
To: Tulip Nandu
Subject: FW: groHMM problems reported in the Multiple platform build/check
Dear developers,
We have a couple of warnings from the builders from our MoonlightR and
Moonlight2R packages, which we haven't had before:
Found the following significant warnings:
Warning: 'rgl.init' failed, running with 'rgl.useNULL = TRUE'.
See '/home/biocbuild/bbs-3.20-bioc/meat/Moonlight2
Thanks, Martin!
Oleksii
On Fri, 25 Oct 2024 at 09:09, Martin Grigorov
wrote:
> Hi Oleksii,
>
> Actually "/usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.32' not found"
> was *the* reason to introduce conda (to install GNU compilers 14.x (gcc,
> gxx together with libstdcxx)).
> But then it appea
Hi Oleksii,
Actually "/usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.32' not found"
was *the* reason to introduce conda (to install GNU compilers 14.x (gcc,
gxx together with libstdcxx)).
But then it appeared that adding ~/miniforge3/lib to LD_LIBRARY_PATH breaks
dnf/yum ...
Now I reworked the wa
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