[Bioc-devel] Symbolic links to ExperimentHub files on Windows

2024-09-23 Thread Richard Heery
Hello all, My package is failing to build on Windows as one of the functions attempts to download files from ExperimentHub and then creates a directory with symbolic links to these files using R.utils::createLink. However, it seems on Windows that administrative privileges are required to create s

Re: [Bioc-devel] about deprecate package DNABarcode

2024-09-23 Thread Kern, Lori via Bioc-devel
Thank you for letting us know. We will undeprecate DNABarcodes in 3.19 and readd to 3.20 Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263

Re: [Bioc-devel] Request un-deprecation of bioconductor package TnT

2024-09-23 Thread Kern, Lori via Bioc-devel
Thank you for fixing the package. TnT has been undeprecated in 3.19 and will reappear in devel 3.20. Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ___

Re: [Bioc-devel] about deprecate package DNABarcode

2024-09-23 Thread Tilo Buschmann
Hi everyone, I updated/fixed the package some time ago and DNABarcodes builds and tests successfully on all Bioconductor platforms. I have a working setup to continue working on any problems with the package. Therefore, I would like to request the package to be un-deprecated. Regards, Tilo

[Bioc-devel] Request un-deprecation of bioconductor package TnT

2024-09-23 Thread Jialin Ma via Bioc-devel
Hi, The package TnT (https://bioconductor.org/checkResults/release/bioc-LATEST/TnT/ ) was deprecated due to check error. I have made fixes to the issue on both devel and 3.19 branch, and I would like to request un-deprecation of t