Hi everyone,
I updated/fixed the package some time ago and DNABarcodes builds and tests successfully on all Bioconductor platforms. I have a working setup to continue working on any problems with the package. Therefore, I would like to request the package to be un-deprecated. Regards, Tilo On 27.03.24 15:27, Kern, Lori wrote: > You'll have to remind them to request un-deprecation here or on the > emails they were reached out to. We will not un-deprecate until the > package is fixed and they request the package not be deprecated to > prove they have an active email. > > Lori Shepherd - Kern > > Bioconductor Core Team > > Roswell Park Comprehensive Cancer Center > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > > ------------------------------------------------------------------------ > *From:* Pedro Sánchez Sánchez <bio.pedro.technol...@gmail.com> > *Sent:* Wednesday, March 27, 2024 10:23 AM > *To:* Sun Wenjie <wenjie....@curie.fr> > *Cc:* Kern, Lori <lori.sheph...@roswellpark.org>; > bioc-devel@r-project.org <bioc-devel@r-project.org>; > buschm...@b-n-w.org <buschm...@b-n-w.org> > *Subject:* Re: [Bioc-devel] about deprecate package DNABarcode > Hi Sun, > > Yes! I was about to write the same to you hahaha > > It's great news! > > Best, > > Pedro > > > On Wed, Mar 27, 2024, 15:18 Sun Wenjie <wenjie....@curie.fr> wrote: > > Hi Pedro, > > Tilo has responded and is currently updating the DNABarcode package. > > Best, > Wenjie > > ________________________________________ > From: Pedro Sánchez Sánchez <bio.pedro.technol...@gmail.com> > Sent: Wednesday, March 20, 2024 1:58 PM > To: Kern, Lori > Cc: Sun Wenjie; bioc-devel@r-project.org > Subject: Re: [Bioc-devel] about deprecate package DNABarcode > > WARNING: This email originated from outside of Institut Curie. > Please validate the sender's email address before clicking on > links or attachments as they may not be safe. > > Hi all, > > I also tried to contact the author on the available email contacts > (waiting for response from > tilo.buschmann...@gmail.com<mailto:tilo.buschmann...@gmail.com>; > depreciated email > tilo.buschm...@izi.fraunhofer.de<mailto:tilo.buschm...@izi.fraunhofer.de>) > I found on the internet. If I get a response, I'll let you know. > > It will be a pity if DNABarcodes is depreciated for lacking of > maintenance. > > Just in case, it is helpful for someone, I just want to mention > there is an apparently similar repository on GitHub with the same > goal as DNABarcodes, by other developers and written in > Python/Jupyter Notebooks: https://github.com/feldman4/dna-barcodes > > <https://secure-web.cisco.com/1apD5NMnNtMjEjs9vEqX18MVGxCO8MShxqR-qjMPFVhSwyP0pu91zeYne0Xke-0sY4TwWe9k6enUSTxs7T7NzRPMaF1o7X7Sudv_yBcA7MyqU4Rkr0JysgcZi4NDH-DGNG5NwCWYDuFYcwAZvo3PJxFsYoUs3DuuzjNCF6LTZUCwYx7HbDkI5egJHxtvLW3nLHHxCraI2tTk0Nr9bYwXfbDppHD_2urEZfSlOFri_PBHFt7_j8p0a5YHO-CyIfqLkIee405IJadEV36I3bVHk95UIDY9NfAda54OGyE2Fw8m_4ybIp_Djhw8BEGvmX2f6/https%3A%2F%2Fgithub.com%2Ffeldman4%2Fdna-barcodes>. > > Best, > > Pedro > > El mar, 12 mar 2024 a las 13:18, Kern, Lori via Bioc-devel > (<bioc-devel@r-project.org<mailto:bioc-devel@r-project.org>>) > escribió: > The package is deprecated in devel. It will remain listed in the > next Bioc 3.19 release, but deprecated, and removed from > anticipated 3.20. The package will have up until the fall release > (generally late Oct / early Nov) to reinstate before it will be > removed. > > Cheers, > > > Lori Shepherd - Kern > > Bioconductor Core Team > > Roswell Park Comprehensive Cancer Center > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > > ________________________________ > From: Bioc-devel > > <bioc-devel-boun...@r-project.org<mailto:bioc-devel-boun...@r-project.org>> > on behalf of Sun Wenjie > <wenjie....@curie.fr<mailto:wenjie....@curie.fr>> > Sent: Tuesday, March 12, 2024 8:07 AM > To: bioc-devel@r-project.org<mailto:bioc-devel@r-project.org> > <bioc-devel@r-project.org<mailto:bioc-devel@r-project.org>> > Subject: [Bioc-devel] about deprecate package DNABarcode > > Hi Bioconductor core team, > > I saw the package of DNABarcode is listed as to be deprecated. > > I am trying to reach the author. Do you know when will be the > deadline? > > Best, > Wenjie > > ------------------------------------------ > Wenjie SUN > Postdoctoral researcher > UMR168, Curie Institute > E-mail: wenjie....@curie.fr<mailto:wenjie....@curie.fr> > Address: batiment Curie, RDC.13A > 11 rue Pierre et Marie Curie, 75005 Paris > > https://secure-web.cisco.com/1-TBJw4o6EGDXK_14o3XCIp7DQhMLTaxvVR4NCL9q9sGYrycpujC_OYkx7ortrnjf5crYpYXyRsFEcpldkHYYLTfw-V9oZUKv8flhupsI5LV_JzcWwDb1FnvBDTYwcj0cXxmA3GNJQVF3Mnc1QnR55FA-_sO9AKIMHbDHD2U1y9HvFChc3nLydpoM4IZQhFrkC01Z7BtNAdt0gmfJzyF8AM4qlM40FR8g5KAPURr03QM4ukAWrszSyzsi9jEVmrUnL0Tjcsf1thPL1wOBupAU-UZtzsKkLIae_8gglI6k6W8kBMlUjp2SvfS4iEIah835/https%3A%2F%2Fcurie.fr%2Fequipe%2Fperie > > _______________________________________________ > Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org> mailing list > > https://secure-web.cisco.com/1l6kli-5ER6TfFRoWON7eg605W9-aPQ1auinsEup1uN5OFQqRFc_QRRlrkmssHncngEABAwXz4PYezr9ontykNdw3OQlPlaKaQJXx9J_ey5JecbnynELh3K-b_GgnpbL94Du22Rl80OCRrkiU3mGuPhIqnUgFxA9Bo9QsZmZHs3u4yuLvZK9QVQxgvloJXJO8Z0H8rBvABpOzApweEY8hv8ovHZBVkWCCPX1r-yGlLt9G_Y1GJvdqruefoEmWpUBxngKD3odX73chnPmSKwS0X31BlZezoSG7BeE5KK_SR8tKGHjf8oxPHoNBTC1WTP6x/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel > > > > This email message may contain legally privileged and/or > confidential information. 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