Re: [Bioc-devel] No cairo device on merida1

This is a known issue that Cairo isn't enabled for the R 4.4 macos binaries that are installed on the macOS devel builders. Unfortunately this impacts a lot of packages. No action is needed. We appreciate your patience while waiting for the issue to be resolved upstream or until a suitable worka

Re: [Bioc-devel] [ext] Re: RCAS build error on Nebbiolo2 - Missing BiocManager

Yes adding BiocManager to the suggest field of your DESCRIPTION will likely correct the ERROR Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263

Re: [Bioc-devel] Change package name

This is not an easy process and will involve manual intervention from the team. What is the package name? Is it already accepted into Bioconductor or is in still in the submission process? Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Bio

Re: [Bioc-devel] Maximum allowed cores on Bioconductor Build System?

I believe the recommendation is not to use more than 2 cores. Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Bioc-devel on

Re: [Bioc-devel] [ext] Re: RCAS build error on Nebbiolo2 - Missing BiocManager

Dear Herve & Kasper, Thank you very much for your responses. The checkSeqDb(‘hg19’) function calls the BSgenome::available.genomes function which in turn calls “get_data_annotation_contrib_url“. The method tries to access `BiocManager::repositories

[Bioc-devel] Maximum allowed cores on Bioconductor Build System?

Hi all, I am wondering if there is a maximum allowed number of cores that can be used when building a vignette on the Bioconductor Build System? I make use of parallel computing in one of my vignettes, but if I don't use enough cores, it takes too long to build the vignette and I get a timeout err