I believe the recommendation is not to use more than 2 cores.
Lori Shepherd - Kern
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
________________________________
From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Richard Heery
<richardhe...@gmail.com>
Sent: Monday, October 30, 2023 5:35 AM
To: bioc-devel@r-project.org <bioc-devel@r-project.org>
Subject: [Bioc-devel] Maximum allowed cores on Bioconductor Build System?
Hi all,
I am wondering if there is a maximum allowed number of cores that can be
used when building a vignette on the Bioconductor Build System? I make use
of parallel computing in one of my vignettes, but if I don't use enough
cores, it takes too long to build the vignette and I get a timeout error.
Currently, I am just using BiocParallel::bpparam() to automatically choose
the parallel backend in the vignette.
Cheers,
Richard
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