[Bioc-devel] Maintainer change and request for undeprection of tweeDEseq

We are sorry for not being responsive to the error messages related to the building of tweeDEseq. The e-mail has not been active for a long time. At the moment we do not have access to the package, would it be possible for me to become a maintainer to solve the errors? My BioC account is associate

Re: [Bioc-devel] DNAcopy git push issue

In this iteration of the app I don't believe so I think you can only add. Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From:

Re: [Bioc-devel] DNAcopy git push issue

Is there a way to remove all the old ssh keys in BiocCredentials? Thanks. On Thu, Jun 29, 2023 at 10:21 AM Kern, Lori wrote: > excellent. good to hear! > > Lori Shepherd - Kern > > Bioconductor Core Team > > Roswell Park Comprehensive Cancer Center > > Department of Biostatistics & Bioinformatic

Re: [Bioc-devel] DNAcopy git push issue

excellent. good to hear! Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Venkat Seshan Sent: Thursday, June 29, 2023 10:24

Re: [Bioc-devel] DNAcopy git push issue

Thank you for pointing me in the right direction. I deleted the old RSA ssh key generated a new one and added it to both GitHub and BiocCredentials. Now everything works. seshanv@omega0:~$ ssh -T g...@git.bioconductor.org | head -5 hello seshanv, this is git@ip-172-30-0-33 running gitolite3 v3.6.6

Re: [Bioc-devel] DNAcopy git push issue

It is authenticating fine except that it is greeting me as venka...@mskcc.org. Thanks. seshanv@omega0:~$ ssh -T g...@git.bioconductor.org | head hello venka...@mskcc.org, this is git@ip-172-30-0-33 running gitolite3 v3.6.6-6-g7c8f0ab on git 2.33.0 R admin/..* R packages/..* R admin/B

Re: [Bioc-devel] RSS feeds not updating for some packages

Thank you for making us aware. We will investigate. I think I found where these individual feeds are generated and have opened an issue on the website https://github.com/Bioconductor/bioconductor.org/issues/235 Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer

Re: [Bioc-devel] DNAcopy git push issue

sorry my previous message didn't render either... What does the following show: ssh -T g...@git.bioconductor.org Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 _

Re: [Bioc-devel] DNAcopy git push issue

From: Bioc-devel on behalf of Venkat Seshan Sent: Wednesday, June 28, 2023 5:35 PM To: bioc-devel@r-project.org Subject: Re: [Bioc-devel] DNAcopy git push issue I saw an error message close to mine mentioned here https://secure-web.cisco.com/1NegEFTMGhRUIXTRIBq

Re: [Bioc-devel] Omada package failing due to removed dependency

We do not allow archived packages to be used. All dependencies must be on CRAN or Bioconductor. So yes if you can get them to reinstate the package on CRAN that would be ideal. If not you will have to remove the package from the dependency list and either re-write the code used (giving origina

Re: [Bioc-devel] DNAcopy git push issue

I cloned the repo afresh set up the remote. seshanv@omega0:~/GitRepos/Bioc/DNAcopy$ git remote -v origin g...@github.com:veseshan/DNAcopy.git (fetch) origin g...@github.com:veseshan/DNAcopy.git (p

Re: [Bioc-devel] Omada package failing due to removed dependency

Hi, in this case maybe it's worth reaching out to the maintainer of clusterCrit. It was removed from CRAN because of (seems-to-be) minor warnings, which can be addressed by the clusterCrit developer in no time... Best, Oleksii On Thu, 29 Jun 2023 at 08:44, Sokratis Kariotis wrote: > Dear Biocon