[Bioc-devel] Windows build error

Hi all, My package cfTools has recently been accepted. I just found that there is a build error on Windows: Multiple platform build/check report for BioC 3.17 - BUILD results for cfTools on palomino3 (bioconductor.org)

[Bioc-devel] Package build on Windows Error.

Hi all, I am working on a package as well as its dependencies. Until yesterday, the packages were *installing* *successfully* on the Windows builder, and there was an error during the *build* process which I was troubleshooting. Now, the packages are all failing on the windows *install* itself, cit

Re: [Bioc-devel] Request for advice on ANCOMBC package error messages in Linux platform

You have this in line 1093-1094 ```{r} samp_frac = out$samp_frac And yet it appears that there is no 'out' object ever generated. There is an 'output' object, that perhaps you meant to use? Also, the vignette building is skipped for Windows and MacOS, which is why it is passing check on those

[Bioc-devel] Request for advice on ANCOMBC package error messages in Linux platform

Dear BioC team, I am the creator of the ANCOMBC package ( http://bioconductor.org/packages/release/bioc/html/ANCOMBC.html). Recently, I committed a bug-fixed change to the ANCOMBC package. Unfortunately, I received error messages for both Bioc 3.16 and 3.17. The error occurred ONLY on the Lin

[Bioc-devel] Important Bioconductor Release 3.17 deadlines this week

The deadline for fixing packages in preparation for the release is this Friday April 21st. All packages should be installing, building, and checking without ERROR in the Bioconductor build report. While you can continue to push changes past this date, this ensures all changes are reflected in a

Re: [Bioc-devel] [deconvR] Issue with version

The even y of your version x.y.z indicates you are trying to push to the RELEASE_3_16 branch? This branch was frozen as of April 10th as following the announced release schedule https://bioconductor.org/developers/release-schedule/ and announced https://stat.ethz.ch/pipermail/bioc-devel/2023-A

[Bioc-devel] [deconvR] Issue with version

Hi BioC team, I'm the maintainer of deconvR, recently we resolved a small issue with one of the functions. I push the changes to BioC, and afterward, we had a check issue with the vignette. Likewise, I solved the issue locally, I want to push the changes to BioC. But I noticed the bioC version of

Re: [Bioc-devel] [gDRtestData] fatal: Could not read from remote repository

By default we assume that the person who submitted the package is going to be the maintainer since generally the person submitting is making the requested changes during the review process. I have updated our configuration and you should be all set. Lori Shepherd - Kern Bioconductor Core Team

Re: [Bioc-devel] [gDRtestData] fatal: Could not read from remote repository

Hi, It seems that the same issue is observed for gDRcore and gDRutils, but not for the gDR, gDRimport and gDRstyle packages. There is one common things for three packages with lack of push permission: they were not submitted by me but by other team members. Bartek Czech (https://github.com/bczech

[Bioc-devel] [gDRtestData] fatal: Could not read from remote repository

Hi, I'm not able to trigger the build by pushing to the g...@git.bioconductor.org:packages/gDRtestData. The following error occurs: ``` gladkia@gladkia-UHMD6M gDRtestData % export LANG=en_US.utf8 git push gladkia@gladkia-UHMD6M gDRtestData % LANG=en_US.utf8 git push FATAL: W any packages/gDRtest