Dear BioC team,
I am the creator of the ANCOMBC package ( http://bioconductor.org/packages/release/bioc/html/ANCOMBC.html). Recently, I committed a bug-fixed change to the ANCOMBC package. Unfortunately, I received error messages for both Bioc 3.16 and 3.17. The error occurred ONLY on the Linux platform (nebbiolo2 for Bioc 3.16, and nebbiolo1 for Bioc 3.17), stating a vignette re-building error that : Error(s) in re-building vignettes: ... --- re-building ‘ANCOM.Rmd’ using rmarkdown --- finished re-building ‘ANCOM.Rmd’ --- re-building ‘ANCOMBC.Rmd’ using rmarkdown --- finished re-building ‘ANCOMBC.Rmd’ --- re-building ‘ANCOMBC2.Rmd’ using rmarkdown Quitting from lines 1093-1103 (ANCOMBC2.Rmd) Error: processing vignette 'ANCOMBC2.Rmd' failed with diagnostics: object 'out' not found --- failed re-building ‘ANCOMBC2.Rmd’ --- re-building ‘SECOM.Rmd’ using rmarkdown --- finished re-building ‘SECOM.Rmd’ SUMMARY: processing the following file failed: ‘ANCOMBC2.Rmd’ Error: Vignette re-building failed. Execution halted The package works fine with Windows and macOS platforms. As the release date for Bioc 3.17 is approaching, I would greatly appreciate your advice on how to address this issue in a timely manner. Thank you very much! Best, Huang Lin [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
