Hi Lori
Just my two-cents: I would not miss UNIGENE.
I am using org.db's mostly to annotate primary gene identifiers (ENTERZID,
ENSEMBL) with
additional human readable information (SYMBOL, GENENAME), and to map between
different
primary identifiers. I mostly use, in decreasing order of importan
I accidently changed the second number (y) of a version number (x.y.z, in
release version), from an even number to an odd number. Now I seems can not
update my package anymore. Is anyone know how to change it back to an even
number?
Thanks,
Zongli
__
I see this is guideline 7 at
https://bioconductor.org/developers/package-guidelines/
I have used LazyData: TRUE so that [pkgname]::[entity] can be used instead
of data(). The
claim that it is "rarely a good thing" and slows down package loading can
be weighed against
convenience. I am not sure y
Dear Bioc members,
I have just encountered a warning during the CHECK that some data objects are
used in the documents but not in code (e.g. “Variables with usage in
documentation object ‘ppTree’ but not in code"). They are the demo data, that I
am using only in the examples for demonstrate the
Hello Bioconductor maintainers
The core team was made aware of an issue with one of the make orgDb functions
in AnnotationForge:
https://github.com/Bioconductor/AnnotationForge/issues/13
Investigating further, NCBI will no longer be updating the gene2unigene file.
The url has moved to an ARC
Thank you Lori!
From: Shepherd, Lori
Sent: Wednesday, April 29, 2020 11:50 AM
To: Cao, Quy ; Herv� Pag�s ;
Nitesh Turaga ; Bioc-devel
Subject: Re: [Bioc-devel] No build report
There are only automatic emails when a package fails. You can get the daily
build reports by going to
http://biocon
There are only automatic emails when a package fails. You can get the daily
build reports by going to
http://bioconductor.org/checkResults/
That has the devel (3.12) and release (3.11) build reports updated daily.
Lori Shepherd
Bioconductor Core Team
Roswell Park Comprehensive Cancer Cente
Hi Herve,
I definitely didn't look into the right place. I was waiting for an email about
my package build report. Thank you so much for pointing this out.
Regards,
Quy
-Original Message-
From: Hervé Pagès
Sent: Wednesday, April 29, 2020 11:44 AM
To: Cao, Quy ; Shepherd, Lori
; Nite
Hi Quy,
Are you looking at the right place? Build report for BioC 3.11 is here
https://bioconductor.org/checkResults/3.11/bioc-LATEST/
and I see PERFect there, since at least Monday.
Best,
H.
On 4/29/20 08:01, Cao, Quy wrote:
Dear Lori,
I haven't seen a build report for the package yet.
Dear Lori,
I haven't seen a build report for the package yet. Should I be waiting for a
little bit more?
Thanks,
Quy
From: Shepherd, Lori
Sent: Monday, April 27, 2020 11:00 AM
To: Cao, Quy ; Nitesh Turaga
; Bioc-devel
Subject: Re: No build report
It looks like you had merge conflicts with
Thank you for letting us know. I'll look into your NEWS file and see why it
wasn't included. If there was an issue with formatting I will contact you off
the bioc mailing list.
Cheers,
Lori Shepherd
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistic
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