Re: [Bioc-devel] Cairo error in Windows server

2020-04-14 Thread Bunis, Daniel
Thanks for these updates. I get the same build error with my package, dittoSeq, so this can probably be "confirmed" as a 'Cairo installation issue that should clear up in tomorrow’s build reports' and not as an animalcules-specific issue. Best, Dan ___ Daniel Bunis P

Re: [Bioc-devel] Cairo error in Windows server

2020-04-14 Thread Shepherd, Lori
I just reinstalled Cairo again to both architectures. Cairo is known to be a particular challenging package for our builders. It looks like a new version appeared on CRAN this past weekend. Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biosta

[Bioc-devel] RELEASE_3_10 branch has been frozen

2020-04-14 Thread Turaga, Nitesh
Dear Maintainers, As a follow up to yesterday's email, the RELEASE_3_10 branch of Bioconductor has been frozen. You will not be able to push your commits to this branch anymore for any reason. Thank you for your contributions to the RELEASE_3_10. Best regards, Nitesh Turaga This email messag

Re: [Bioc-devel] Warning in tokay2

2020-04-14 Thread Martin Morgan
See the documentation at https://cran.r-project.org/doc/manuals/r-release/R-exts.html#Cross_002dreferences -- you probably have something \link[foo]{bar}, which says that 'bar' is documented on a help page WITH A FILE NAME 'foo', but actually the file name is something else. The simplest solut

Re: [Bioc-devel] Warning in tokay2

2020-04-14 Thread Shepherd, Lori
Please see this post: https://stat.ethz.ch/pipermail/bioc-devel/2019-April/014999.html Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 F

[Bioc-devel] Warning in tokay2

2020-04-14 Thread VALLEJOS MENESES Catalina
Dear all, The build report for BASiCS currently includes a warning in tokay2 (but malbec2 and machv2 are ok). This seems to be an issue associated to the documentation of brewer.pal in RColorBrewer: file link 'brewer.pal' in package 'RColorBrewer' does not exist and so has been treated as a t

[Bioc-devel] Bioconductor Developers Forum - Thursday 16th April

2020-04-14 Thread Mike Smith
Dear all, The next Bioconductor Developers' Forum is scheduled for Thursday 16th April at 09:00 PDT/ 12:00 EDT / 18:00 CEST (Note: This is back to the usual time in Europe, Check here! ) We will be us