See the documentation at 
https://cran.r-project.org/doc/manuals/r-release/R-exts.html#Cross_002dreferences
 -- you probably have something \link[foo]{bar}, which says that 'bar' is 
documented on a help page WITH A FILE NAME 'foo', but actually the file name is 
something else.

The simplest solution is to write this as \link{bar} and let the help system 
resolve the location dynamically.

The complicated and not-best-practice solution is to find out what the name of 
the file is, and use that instead of 'foo'. But the name of a help file sounds 
like internal package business that other packages shouldn't need to know 
about...

Martin

On 4/14/20, 9:51 AM, "Bioc-devel on behalf of VALLEJOS MENESES Catalina" 
<bioc-devel-boun...@r-project.org on behalf of catalina.valle...@igmm.ed.ac.uk> 
wrote:

    Dear all,
    
    The build report for BASiCS currently includes a warning in tokay2 (but 
malbec2 and machv2 are ok). This seems to be an issue associated to the 
documentation of brewer.pal in RColorBrewer:
    
    
    file link 'brewer.pal' in package 'RColorBrewer' does not exist and so has 
been treated as a topic
    
    I can see that other packages have similar warnings in tokay2. Has anyone 
found a solution for it?
    
    Many thanks in advance,
    
    Best wishes,
    
    Cata
    
    The University of Edinburgh is a charitable body, registered in Scotland, 
with registration number SC005336.
    
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