Re: [Bioc-devel] R CMD build error for 3.10 (but not 3.11)

2020-02-24 Thread L Rutter
Dear Lori: Thanks for the suggestions. I tried to follow the linked instructions on February 4 and February 9, but was unsuccessful both times (i.e. did not see the changes pushed to the release branch). I tried following the instructions again today. I notice that when I issue the command: git m

Re: [Bioc-devel] Deleting netDx.examples package from BioC

2020-02-24 Thread Shraddha Pai
Hi Martin, Great, this is all very helpful. Thanks especially for the workflow to set up a Docker instance and run the build test. Best,Shraddha On Mon, Feb 24, 2020 at 2:34 PM Martin Morgan wrote: > Generally the guidelines are at > > https://bioconductor.org/developers/how-to/git/ > > and y

[Bioc-devel] atSNP graphic error on malbec1 and malbec2

2020-02-24 Thread Shin, Sunyoung
Dear all, My package plotting function encounters an error on Bioconductor linux servers: malbec1 and malbec2. The error does not occur on my linux server. Are there anyone who have had similar experiences? The plotting function is plotMotifMatch of atSNP Bioconductor. FYI, here is the session

Re: [Bioc-devel] Deleting netDx.examples package from BioC

2020-02-24 Thread Martin Morgan
Generally the guidelines are at https://bioconductor.org/developers/how-to/git/ and you'll access 'devel' as the master branch and release as the RELEASE_3_10 branch of git clone g...@git.bioconductor.org:packages/netDx 'We' do not offer a faster way to iterate on the nightly builds; the

Re: [Bioc-devel] Deleting netDx.examples package from BioC

2020-02-24 Thread Shraddha Pai
Hi Martin, Great, thank you. I will set the number of cores to one for the examples (must have had something running in parallel). I was unable to find the BioC github repo for netDx in the devel branch - what is the URL for that? It would help me ascertain if my push indeed synchronized with BioC

[Bioc-devel] Biostrings: unicode characters

2020-02-24 Thread Ulrich Bodenhofer
Dear colleagues, Apart from my Bioconductor packages, I am also the maintainer of the CRAN package 'apcluster'. This package's vignette includes an example in which biological sequences are clustered. To this end, it uses the 'Biostrings' package. It seems that the latest version of the 'Bios