Hi Martin, Great, thank you. I will set the number of cores to one for the examples (must have had something running in parallel).
I was unable to find the BioC github repo for netDx in the devel branch - what is the URL for that? It would help me ascertain if my push indeed synchronized with BioC github repo. Also is there another build process I could use to get quicker feedback on issues, so I can resolve them sooner? If I understand correctly, waiting for the nightly build means having the turnaround time of a day to know whether or not a fix worked. Best,Shraddha On Sat, Feb 22, 2020 at 7:49 AM Martin Morgan <mtmorgan.b...@gmail.com> wrote: > We've removed netDx.examples from the build manifest and from our git > repository; these changes will propagate through the system over the next > couple of days. Thanks for pointing this out! > > The builds are nightly, and summarized from this page > http://bioconductor.org/checkResults/ > > This is the report for your package > > > http://bioconductor.org/checkResults/3.11/bioc-LATEST/netDx/tokay2-checksrc.html > > Note the 'snapshot' date (the time the nightly builds started) and the > time the page was generated (after the completion of nightly builds of all > packages). Any commit after the snapshot date won't be included in the > build report. > > Looks like there is a (obscure!) problem on the Linux builder -- parallel > evaluation is often challenging to make robust, because the builder is > heavily used, and a better strategy is usually to tackle more modest > analyses in examples. > > Martin > > On 2/21/20, 2:43 PM, "Bioc-devel on behalf of Shraddha Pai" < > bioc-devel-boun...@r-project.org on behalf of shraddhapai.ne...@gmail.com> > wrote: > > Hello BioC team, > My package netDx was recently accepted to BioC (yay!). Its original > companion package netDx.examples was, as well. However, the latter is > now > outdated because I'm pulling the data for the examples directly from > BioConductor. > > How can I delete the netDx.examples package from BioConductor? > > https://bioconductor.org/packages/devel/data/experiment/html/netDx.examples.html > > Separately, I am also refreshing my memory about how feedback from the > build process works after a package is submitted, so I may have > questions > after reading the instructions... > > Thank you, > Shraddha > -- > -- > Shraddha Pai, PhD > http://shraddhapai.com ; @spaiglass on Twitter > Post-doctoral Fellow, http://baderlab.org > The Donnelly Centre for Cellular and Biomolecular Research > University of Toronto > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > -- -- Shraddha Pai, PhD http://shraddhapai.com ; @spaiglass on Twitter Post-doctoral Fellow, http://baderlab.org The Donnelly Centre for Cellular and Biomolecular Research University of Toronto [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
