Re: [Bioc-devel] BiocManager not installing latest release version of DepecheR

BiocManager should recognize versions automatically for the version of R. I believe we had a message that would be displayed in this case where there was a more recent version available Something along the lines of: Bioconductor version '3.9' is out-of-date; the current release version '3.10'

Re: [Bioc-devel] BiocManager not installing latest release version of DepecheR

Yes, this sounds like a very good solution. Thank you all for your input, and I hope this silly mistake of mine might have some positive consequence. Best Jakob From: Bioc-devel on behalf of Aaron Lun Sent: 13 November 2019 18:56 To: Shepherd, Lori Cc: bioc-dev

Re: [Bioc-devel] BiocManager not installing latest release version of DepecheR

Perhaps the installation instructions on each package's landing page should explicitly specify 'version=3.10' (or whatever happens to be the latest release) in the install() call. This avoids ambiguities with using the latest version when the current and previous releases are on the same version of

Re: [Bioc-devel] scPCA: Push Access Request

Thanks, Nitesh — much appreciated. Best, Nima On Wed, Nov 13, 2019 at 8:23 AM Turaga, Nitesh < nitesh.tur...@roswellpark.org> wrote: > You should have access now. > > > > *From: *Nima Hejazi > *Date: *Wednesday, November 13, 2019 at 11:01 AM > *To: *"Turaga, Nitesh" > *Cc: *Philippe Boileau ,

Re: [Bioc-devel] scPCA: Push Access Request

You should have access now. From: Nima Hejazi Date: Wednesday, November 13, 2019 at 11:01 AM To: "Turaga, Nitesh" Cc: Philippe Boileau , "bioc-devel@r-project.org" Subject: Re: [Bioc-devel] scPCA: Push Access Request Hi Nitesh — Thanks for the quick reply. Sure, I think this berkeley.edu

Re: [Bioc-devel] BiocManager not installing latest release version of DepecheR

It looks like you are still installing release 3.9 versions of packages. The latest version is release 3.10. If you do BiocManager::version() Does it show "3.9" or "3.10"? I'm betting "3.9" You can do BiocManager::install(version="3.10") BiocManager::install() To update all packages to 3.1

Re: [Bioc-devel] BiocManager not installing latest release version of DepecheR

Update your installation BiocManager::install(version = "3.10") or see the vignette browseVignette("BiocManager") section 'Managing multiple versions" to manage multiple installations (in case you need to reproduce existing workflows). Martin On 11/13/19, 11:07 AM, "Bioc-devel on behalf of

[Bioc-devel] BiocManager not installing latest release version of DepecheR

Dear all, This is probably a mistake on my side, but I just now tried to install the last release version of DepecheR (for which I am the maintainer), and although the source package on BioConductor is 1.2, this is the text I get from BiocManager when installing: Bioconductor version 3.9 (BiocM

Re: [Bioc-devel] scPCA: Push Access Request

Hi Nitesh — Thanks for the quick reply. Sure, I think this berkeley.edu address is the one I’ve been using for push access to the Bioconductor git server (should match other packages I maintain too). Best, Nima On Wed, Nov 13, 2019 at 7:45 AM Turaga, Nitesh < nitesh.tur...@roswellpark.org> wrote

Re: [Bioc-devel] scPCA: Push Access Request

Hi, I'll help you with this. Nima, I'm guessing the email you want is the same one? Best, Nitesh On 11/13/19, 10:45 AM, "Bioc-devel on behalf of Philippe Boileau" wrote: Hello BioC Team, This is to confirm that the Nima Hejazi and I are co-developers of this package, and

Re: [Bioc-devel] scPCA: Push Access Request

Hello BioC Team, This is to confirm that the Nima Hejazi and I are co-developers of this package, and that Nima should be granted push access to its repository on the BioC git server. Thank you for your help! Best, Philippe Boileau On Tue, Nov 12, 2019 at 10:52 PM Nima Hejazi wrote: > Dear Bi