It looks like you are still installing release 3.9 versions of packages. The latest version is release 3.10.
If you do BiocManager::version() Does it show "3.9" or "3.10"? I'm betting "3.9" You can do BiocManager::install(version="3.10") BiocManager::install() To update all packages to 3.10 versions Cheers, Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Jakob Theorell <jakob.theor...@ndcn.ox.ac.uk> Sent: Wednesday, November 13, 2019 11:06 AM To: bioc-devel@r-project.org <bioc-devel@r-project.org> Subject: [Bioc-devel] BiocManager not installing latest release version of DepecheR Dear all, This is probably a mistake on my side, but I just now tried to install the last release version of DepecheR (for which I am the maintainer), and although the source package on BioConductor is 1.2, this is the text I get from BiocManager when installing: Bioconductor version 3.9 (BiocManager 1.30.9), R 3.6.1 (2019-07-05) Installing package(s) 'DepecheR' trying URL 'https://bioconductor.org/packages/3.9/bioc/bin/macosx/el-capitan/contrib/3.6/DepecheR_1.0.3.tgz' This is clearly the old version, that does not contain all the updates that the source package contains. Have I missed something I should have done to prevent this and what can I in that case do now? Best regards Jakob Theorell, MD/PhD Autoimmune Neurology Group Nuffield Department of Clinical Neurosciences University of Oxford [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
