Re: [Bioc-devel] 'OUTRIDER' Bioconductor package

2019-10-11 Thread Martin Morgan
I think this is an error in BiocParallel that has been corrected (in v. 1.19.4) but not yet propagated through the build system and report. Martin On 10/11/19, 7:33 PM, "Bioc-devel on behalf of Christian Mertes" wrote: Dear Bioc Team, I noticed already the error and I'm not comp

Re: [Bioc-devel] 'OUTRIDER' Bioconductor package

2019-10-11 Thread Christian Mertes
Dear Bioc Team, I noticed already the error and I'm not completely sure why this is happening. On appveyor it is going through with no problems. I never call the function mcparallel but I did register MulticoreParams() in the vignette which could caused the problem. But I'm puzzled why it works

[Bioc-devel] Bioconductor 3.10 db0s are available

2019-10-11 Thread Interdonato, Kayla
The newest db0 packages for the upcoming Bioconductor 3.10 release are up and should propagate within a day or so. The deadline for submitting contributed annotations will be Wednesday October 23rd. The new db0 packages are: anopheles.db0_3.10.0.tar.gz arabidopsis.db0_3.10.0.tar.gz bovine.db0_3

[Bioc-devel] check fails on arch 'i386'

2019-10-11 Thread Toth, Reka
Dear BioC developers, The most recent build of methrix fails on Tokay1 server: https://bioconductor.org/spb_reports/methrix_buildreport_20191009174210.html The error message is the following: ** running examples for arch 'i386' ... ERROR Running examples in 'methrix-Ex.R' failed The error most

[Bioc-devel] Big repo problem & consequences: all commits duplicated

2019-10-11 Thread Cuklina Jelena
Dear all, while trying to fix the WARNING of “too big files” for my repo proBatch, I used BFG, and ALL my commits (or at least many-many dozens of them) are duplicated (some up to 5-10 copies). I guess this is because of my pull-push efforts, which I naively “resolved” with git pull origin mast

[Bioc-devel] RELEASE_3_9 Branch freeze

2019-10-11 Thread Shepherd, Lori
In preparation for the Bioconductor 3.10 release on October 30th we will be freezing the current release 3.9 branch on Tuesday October 15th . There will be no opportunities to commit or correct the release 3.9 branch after the freeze. We encourage everyone to push fixes as soon as possible and w