Dear BioC developers,
The most recent build of methrix fails on Tokay1 server: https://bioconductor.org/spb_reports/methrix_buildreport_20191009174210.html The error message is the following: ** running examples for arch 'i386' ... ERROR Running examples in 'methrix-Ex.R' failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: get_region_summary > ### Title: Extract and summarize methylation or coverage info by regions of > ### interest > ### Aliases: get_region_summary > > ### ** Examples > > data("methrix_data") > get_region_summary(m = methrix_data, regions = data.table(chr = "chr21", > start = 27867971, end = 27868103), type = "M", how = "mean") -Checking for overlaps.. Error: cannot allocate vector of size 1.4 Gb Execution halted I am a bit puzzled what the reasons could be, since it passed this step during the previous builds and I didn’t change any of the functions in my last commit. When I run the check on our local Windows, I don’t get any error. We use a very small dataset as example, it definitely should not use a vector of size 1.4 Gb. I would appreciate every input or idea on how to tackle this error. Thanks a lot! Best, Reka Dr. Reka Toth Computational Epigenomics Group Division of Epigenomics and Cancer Risk Factors /C010 Postdoctoral Fellow German Cancer Research Center (DKFZ) Foundation under Public Law Im Neuenheimer Feld 280 69120 Heidelberg Germany r.t...@dkfz-heidelberg.de www.dkfz.de _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
