Bumping this rather old thread. To re-iterate, I'm updating my simpleSingleCell
workflow and I'm running into R's DLL limit. I've added a code block halfway
through the workflow that unloads all DLLs and cleans them out, and this works
fine during compilation on my local machine.
However, it s
I'll leave the first point to the SummarizedExperiment maintainers, though I
note that your code seems to be about the names of the dimnames rather than the
dimnames themselves. (I'm under the impression that consistency in the actual
dimnames is enforced somehow by the SE constructor.)
As fo
Hi,
I am trying to build a package (called MACPET) and I am struggling to solve
some problems.
First of all, I am using c++ code through the Rcpp package. I have read that
there is no need of a makeovers file in the package anymore. Is that true? Or
should I include a makevars file somewhere?
Hi Everyone,
One of my colleagues is creating an R package to submit to bioconductor. In one
of his functions he is creating a plot with ggplot2. I tested out the function
for him and occasionally I get the error below. It happens sporadically using
the exact same input as when it works normall
Dear Bioconductor Team,
I had a couple of quick questions
1) Is our package set to go into the next Bioconductor if it’s made it through
the submission process and we have access to the Bioconductor git repository?
Is the master branch for that properly staged for the upcoming release, or do
w
On 09/15/2017 10:01 AM, Nan Xiao wrote:
Hi Vladimir,
- it looks like the same issue as reported here a few days ago:
https://stat.ethz.ch/pipermail/bioc-devel/2017-September/011540.html
Probably due to the hs-tls bug which caused the communication errors
between pandoc and Google servers.
so
Hi Vladimir,
- it looks like the same issue as reported here a few days ago:
https://stat.ethz.ch/pipermail/bioc-devel/2017-September/011540.html
Probably due to the hs-tls bug which caused the communication errors
between pandoc and Google servers.
Best,
-Nan
On Fri, Sep 15, 2017 at 5:40 AM, V
It is trying to push to git.bioconductor.org. You probably don’t have your
remotes set up right.
Try
`git remote -v` and paste the result.
> On Sep 15, 2017, at 4:23 AM, Samuel Wieczorek wrote:
>
> Hi all,
>
> I try to create a remote branch but it fails. The branch is named tes3.
> I used
Hi Aaron,
thanks fo reporting this! I've fixed it in BiocStyle 2.5.38.
Best,
Andrzej
On Fri, Sep 15, 2017 at 9:23 AM, Aaron Lun wrote:
> Dear list,
>
>
> I'm playing around with the BiocStyle aesthetics for my csaw user's guide,
> and it looks pretty good in general. However, setting fig.wide=
Hi,
In my package's (scmap) vignette I plot a Sankey digram using gvisSankey
function from googleVis package. It used to work and the digram was
plotted, but now there is this error (on devel branch -
http://bioconductor.org/checkResults/devel/bioc-LATEST/scmap/malbec1-buildsrc.html
):
pandoc: Co
Fixed ! the address for my git repositories was wrong ;-)
Le 15/09/2017 à 10:23, Samuel Wieczorek a écrit :
> Hi all,
>
> I try to create a remote branch but it fails. The branch is named tes3.
> I used the following command :
>
> > git push origin tes3
>
>
> and here is the error message I rec
Hi all,
I try to create a remote branch but it fails. The branch is named tes3.
I used the following command :
> git push origin tes3
and here is the error message I received :
Total 0 (delta 0), reused 0 (delta 0)
remote: FATAL: W refs/heads/tes3 packages/Prostar s.wieczorek DENIED by
fall
Dear list,
I'm playing around with the BiocStyle aesthetics for my csaw user's guide, and
it looks pretty good in general. However, setting fig.wide=TRUE doesn't seem to
be respected by knitr during compilation. To give an example:
%%% Latex code start %%%
\documentclass{article}
<>=
Bio
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