Hi,
I am trying to build a package (called MACPET) and I am struggling to solve
some problems.
First of all, I am using c++ code through the Rcpp package. I have read that
there is no need of a makeovers file in the package anymore. Is that true? Or
should I include a makevars file somewhere?
Furthermore, I have a vignette Rmd file. When I try to knit the file I get the
following error:
/usr/local/bin/pandoc +RTS -K512m -RTS MACPET.utf8.md --to latex --from
markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash
--output
/private/var/folders/6n/6y8cjthx4sb0hk5k5w8q3lw40000gn/T/RtmpGECAhX/preview-8e8131b72d.dir/MACPET.tex
--table-of-contents --toc-depth 2 --template
/var/folders/6n/6y8cjthx4sb0hk5k5w8q3lw40000gn/T//RtmpsDFxOM/BiocStyle/template.tex
--number-sections --highlight-style tango --latex-engine
/Library/TeX/texbin/pdflatex --include-in-header
/var/folders/6n/6y8cjthx4sb0hk5k5w8q3lw40000gn/T//RtmpsDFxOM/90c2c32b20e.tex
--variable tables=yes --standalone --filter /usr/local/bin/pandoc-citeproc
output file: MACPET.knit.md
Latexmk: This is Latexmk, John Collins, 19 Jan. 2017, version: 4.52c.
Latexmk: No file name specified, and I couldn't find any
Use
latexmk -help
to get usage information
Output created:
/private/var/folders/6n/6y8cjthx4sb0hk5k5w8q3lw40000gn/T/RtmpGECAhX/preview-8e8131b72d.dir/MACPET.pdf
Error in tools::file_path_as_absolute(output_file) :
file
'/private/var/folders/6n/6y8cjthx4sb0hk5k5w8q3lw40000gn/T/RtmpGECAhX/preview-8e8131b72d.dir/MACPET.pdf'
does not exist
Calls: <Anonymous> -> <Anonymous>
Execution halted
When I try system("R CMD Sweave --engine=knitr::rmarkdown --pdf
vignettes/MACPET.Rmd") I get another error:
Latexmk: This is Latexmk, John Collins, 19 Jan. 2017, version: 4.52c.
Error in find_vignette_product(name, by = "weave", engine = engine) :
Failed to locate the 'weave' output file (by engine 'knitr::rmarkdown') for
vignette with name 'MACPET'. The following files exist in directory '.':
'DESCRIPTION', 'MACPET.Rproj', 'NAMESPACE'
Calls: <Anonymous> -> do.call -> <Anonymous> -> find_vignette_product
Execution halted
However, when I move the Rmd file outside the package, for example on my
desktop, and knit it there, I don't get any error, it only happens when inside
the package folders. My description file is as suggested in the Biostyle, and
the yelm too.
Best,
--
Ioannis Vardaxis
Stipendiat IMF
NTNU
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