Re: [Bioc-devel] The story of tracing a derfinder bug on OSX that sometimes popped up, sometimes it didn't. Related to IRanges/S4Vectors '$<-'

I merged them. On Thu, Mar 30, 2017 at 4:29 AM, Michael Lawrence wrote: > Yea I will have to port the recent fixes. > > On Wed, Mar 29, 2017 at 11:32 PM, Hervé Pagès wrote: >> On 03/27/2017 09:43 AM, Michael Lawrence wrote: >>> >>> I committed a fix into R trunk with a regression test. >> >> >>

Re: [Bioc-devel] Problem with "RGChannelSetExtended" class form minfi

On 04/02/2017 05:15 AM, Mohammad Tanvir Ahamed via Bioc-devel wrote: Hi, In minfi (1.20.2), in current release version Bioconductor 3.4, the "RGChannelSetExtended" class is defined as getClass("RGChannelSetExtended") Class "RGChannelSetExtended" [package "minfi"] Slots: Name: assa

Re: [Bioc-devel] R CMD check without WARNING: g++ and STL issue for xcms and mzR

On 04/02/2017 06:52 AM, Neumann, Steffen wrote: Hi, in preparation for the release, we are hunting down WARNINGS "Found ‘abort’, possibly from ‘abort’ (C)" in xcms/mzR. The abort() call is not coming from XCMS, but rather from the C++ code in the STL, and we have no idea how to get rid of it. W

[Bioc-devel] R CMD check without WARNING: g++ and STL issue for xcms and mzR

Hi, in preparation for the release, we are hunting down WARNINGS "Found ‘abort’, possibly from ‘abort’ (C)" in xcms/mzR. The abort() call is not coming from XCMS, but rather  from the C++ code in the STL, and we have no idea  how to get rid of it. We are tracking this in: https://github.com/sneum

[Bioc-devel] Problem with "RGChannelSetExtended" class form minfi

Hi, In minfi (1.20.2), in current release version Bioconductor 3.4, the "RGChannelSetExtended" class is defined as > getClass("RGChannelSetExtended") Class "RGChannelSetExtended" [package "minfi"] Slots: Name: assayData phenoData featureData experimentData an