Hi,
In minfi (1.20.2), in current release version Bioconductor 3.4, the
"RGChannelSetExtended" class is defined as
> getClass("RGChannelSetExtended")
Class "RGChannelSetExtended" [package "minfi"]
Slots:
Name: assayData phenoData featureData experimentData
annotation protocolData .__classVersion__
Class: AssayData AnnotatedDataFrame AnnotatedDataFrame MIAxE
character AnnotatedDataFrame Versions
Extends:
Class "RGChannelSet", directly
Class "eSet", by class "RGChannelSet", distance 2
Class "VersionedBiobase", by class "RGChannelSet", distance 3
Class "Versioned", by class "RGChannelSet", distance 4
>
But in minfi (1.21.5), in the development version Bioconductor 3.5, the
"RGChannelSetExtended" class is defined as
> getClass("RGChannelSetExtended")
Class "RGChannelSetExtended" [package "minfi"]
Slots:
Name: annotation colData assays NAMES elementMetadata
metadata
Class: character DataFrame Assays character_OR_NULL DataFrame
list
Extends:
Class "RGChannelSet", directly
Class "SummarizedExperiment", by class "RGChannelSet", distance 2
Class "Vector", by class "RGChannelSet", distance 3
Class "Annotated", by class "RGChannelSet", distance 4
Now to make a new package, which class definition I need to use ?
And also , for dependency some other packages (wateRmelon, ChAMP), in their
development version Bioconductor 3.5, still using the old definition of
"RGChannelSetExtended".
If so, how to solve the problem ?
Tanvir Ahamed
Göteborg, Sweden | mashra...@yahoo.com
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